KEGG   Cyclopterus lumpus (lumpfish): 117738968
Entry
117738968         CDS       T09199                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117738968 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:clum03041]
    117738968 (snrnp40)
Spliceosome [BR:clum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    117738968 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    117738968 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54
Other DBs
NCBI-GeneID: 117738968
NCBI-ProteinID: XP_034401068
Ensembl: ENSCLMG00005019417
UniProt: A0A8C3AHS1
LinkDB
Position
11:10997533..11003057
AA seq 347 aa
MIEPKKRAADMAVVPTAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTD
KTIGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAATFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacccaagaagagagcggcggacatggcggtggttccgaccgccgtgaagcgg
ccccggacggagctggtggcggcggcgcagtcgcagcaactcgtggcgatgggtccccca
cggagctcgagcctgcaggctccaattatgctgatgtctggccacgagggcgaggtttac
tgctgcaagtttcaccccaatggagccacgctggcctcctcaggatttgacaggctcata
ttaatgtggaatgtatacggggattgtgacaattatgccactctgaagggccacagtgga
gcagtgatggagctccactacaacacagatggcagcatgctgttttcggcgagcacagac
aagactataggtgtgtgggatagtgaaacaggcgagaggatcaagcgtctgaagggccac
acctccttcgttaacacctgctaccccgctcgccgagggccccagctcgtctgcaccggc
agcgatgacgggacagtcaagctgtgggacattcgtaagaaaggggcgatccacactttc
cagaatacctaccaggtgctagccgcaacgtttaatgacaccagtgatcagatcctgtcg
ggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagctgatatacaat
atgcacggccatggggactcagtaactggactcagtctgagctctgaggggtcatacctt
ctctcaaactccatggacaacactgtgcgtatttgggatgtccgaccgtttgcacccaag
gagagatgcgtgaagattttccagggcaacgttcacaactttgagaagaatctgctgagg
tgctcctggtctactgacggcagtaagatagctgccggctcagccgacaggtttgtgtat
atctgggacaccacatcacgtagaatcctctacaagctgccgggccacgccggttctgtc
aatgaagtggcctttcacccagaggagcctatagtattgtctggcgccagtgacaaaagg
ctctacatgggagaaattcagtag

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