Cyclopterus lumpus (lumpfish): 117739019
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Entry
117739019 CDS
T09199
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117739019 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117739019 (exosc7)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117739019 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
117739019 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117739019
NCBI-ProteinID:
XP_034401153
Ensembl:
ENSCLMG00005014251
UniProt:
A0A8C2ZLQ9
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All DBs
Position
11:complement(6128207..6131080)
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AA seq
291 aa
AA seq
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MATVQVSEAEKVYILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTAVLV
GIKADIGKPRPGVPNEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYKVFNNKHSVD
LKSLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPKVHISADEEGGKEI
ELSDDPYDCMRLDVENVPCIVTLCKVGHRHVVDVTLQEKACSVASLIISVTHTGTVTCTR
KVGGGSLDPESIFEMTEAGKRVGKALHAPLMKLLQQEESLGKTRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagtacaagtcagcgaggccgaaaaagtgtacatcttacacggtatacgggat
gacttacgagtggacgggagaggctgtgaggactacagacacatggagatagagaccgac
gtggtgtccaacacagacggctccgccaaagtcactctgggccacacagcggttctggtt
gggattaaggccgacattggaaaaccgaggcccggggtgccaaatgaaggctacttggaa
ttctttgtagactgttcggccaatgcaacccccgagtttgagggcagaggaggggaggag
ctggggacggagctgagtaacacactctacaaagtcttcaacaacaaacacagcgtggac
ctgaagagcctctgcatcagtgcaggagaacactgctgggtcctctatgtggatgtgctg
ctcctgcagtgtgatggaaacctctacgatgccatctcagtagctattaaggcagctctc
ttcaacacaaaaattcccaaagtgcacatatcagctgacgaggaaggagggaaggaaatc
gagctgtcggatgacccgtatgattgcatgagactcgatgtagaaaatgttccttgcata
gtgacgttgtgcaaggtgggccacaggcacgtagtggacgtgactctgcaggagaaggcc
tgctccgtggcgagcctgatcatctctgtcacacacacgggcacggtcacctgcaccagg
aaggtgggcggaggcagcctggatccagagagtatctttgaaatgacagaggcagggaaa
cgggtcgggaaggcccttcatgctccgctcatgaagctgctgcagcaggaggagagtttg
ggaaagacacgacagaaagttggcttccttggttga
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integrated database retrieval system