Cyclopterus lumpus (lumpfish): 117739160
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Entry
117739160 CDS
T09199
Symbol
irx1b
Name
(RefSeq) LOW QUALITY PROTEIN: iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117739160 (irx1b)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
117739160 (irx1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
117739160
NCBI-ProteinID:
XP_034401349
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Position
11:18096686..18100332
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AA seq
468 aa
AA seq
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MSFPQLGYPQFLSASHEVYGGERPASAREGGTEGGLSSSATAAAVGSMLGMYGSPWSHNY
SAFLPYSGAADLALISQMGSQYELKDSPGSHPASLPVHAAQGFYPYGQYPYGDPSRAKTA
TRETTSTLKAWLQEHQKNPYPTKGEKIMLAIITRMTLTQVSTWFANARRRLKKENKVTWG
RSAEDRDGRIFSSDNEDEIGKNGSDDEDEEEEIDLETVDIERPEEQGAGEQGSGKGEGEG
EGEGEAGLADREQASEPKSSESSRTLSVEGLRGVEAAIALNRSPVVKLAVDHSPSRQECQ
RPPQSKPKIWSLAETATAPTAPHRPSAAAHAHHPALASAGHPXLLPGHGIYTCQIGKLHN
WANAAFLNANSLLNMRSLLGGAPAGHLPLHGAVPVARHDARQAAAAAAGPXTSGTEEDSD
VESSGSFSPKRRDEESDHRPDSXESPFQLITDRPHTGTAPQRVVTTTL
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccctcagctggggtacccccagttcctcagcgcctcccatgaggtgtacggg
ggcgagcggccggcctctgcccgggaaggaggcaccgaaggcggcttgagctcgtccgct
accgccgcggctgtcggctccatgctggggatgtacgggagcccgtggagccacaactac
agtgcctttctgccgtacagcggagccgcagacctcgccctcatatcccagatgggctcc
cagtatgagctgaaggacagcccggggtcccacccggcctctctgccggtccacgccgca
caaggcttctacccatacggccagtacccgtacggggacccgtcgagggccaagacggcc
acccgggagaccaccagcaccctgaaggcctggctgcaggagcaccagaagaacccctac
cccaccaaaggagagaagatcatgctcgccatcatcacccggatgacactcacacaggtg
tcgacgtggttcgcgaacgcacgcagacgcctgaagaaggagaacaaggtcacctggggc
cgcagcgccgaggaccgggacggccgcatcttcagcagcgacaacgaggacgagatcggc
aagaacggcagcgacgacgaggacgaagaggaggagatcgatttggaaacggtcgacatc
gagaggcccgaggagcaaggagccggggagcagggctccgggaagggagagggagaggga
gagggagagggggaggcaggcctggccgaccgagagcaggcctcggagccgaagagctcc
gagagcagcaggacgctttccgtggagggcctgcgaggagtggaggcggctattgccctc
aacagatcgccggttgtcaaactcgcagtggatcattctcccagcagacaggagtgccag
agaccaccgcagagcaaacctaaaatctggtccctggccgagaccgccacggccccgaca
gctcctcacagaccttccgccgcggcccacgcgcaccacccggctttggcctccgccggc
cacccgngcttgctcccgggtcacgggatttacacgtgccagattggcaaactgcacaac
tgggccaacgcggcttttctgaacgccaactctcttttgaacatgcggtcgctcctcgga
ggggcgccggccggacacctgcctctccacggcgcggtgccggttgcgcgtcacgacgca
cggcaggcggcggcggcggcggcggggccctgaacttcggggacggaggaggacagcgac
gtggagtcgtcggggagcttcagtccaaaaaggagagacgaggagagcgaccacaggccc
gattccncggagtccccattccagctgatcactgacagacctcacacggggacggcacca
cagcgagtcgtgacgacgacgttatga
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