Cyclopterus lumpus (lumpfish): 117739288
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Entry
117739288 CDS
T09199
Symbol
nfatc1
Name
(RefSeq) nuclear factor of activated T-cells, cytoplasmic 1 isoform X1
KO
K04446
nuclear factor of activated T-cells, cytoplasmic 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04010
MAPK signaling pathway
clum04020
Calcium signaling pathway
clum04148
Efferocytosis
clum04218
Cellular senescence
clum04310
Wnt signaling pathway
clum04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117739288 (nfatc1)
04310 Wnt signaling pathway
117739288 (nfatc1)
04020 Calcium signaling pathway
117739288 (nfatc1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117739288 (nfatc1)
09143 Cell growth and death
04218 Cellular senescence
117739288 (nfatc1)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117739288 (nfatc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117739288 (nfatc1)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
117739288 (nfatc1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_dimer
RHD_DNA_bind
TIG
Motif
Other DBs
NCBI-GeneID:
117739288
NCBI-ProteinID:
XP_034401500
Ensembl:
ENSCLMG00005008742
LinkDB
All DBs
Position
11:complement(3767132..3806523)
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AA seq
862 aa
AA seq
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MKSAEEEAYGYLPDVSLSLPLGNPCLPSQYHSLQSSPTISVSVSVTEPHGYDAQDDMRAA
GYYSSPRPNGAPTLESPRIEITAYGQFTEDEVEESNLPVAKRVNSIVTLTLPCADSYRDP
SCLSPASSISSRSCHSDASSYESSFSYNYDNSPQNSPWQSPSVSPKGSTLTLPGDSCTSG
GSPRHSPSTSPRTSVTDDSWMGQRGSRPNSPCGAKRKYSFNGSRASHKHYPYSPNISPGL
SPQTSPRLSITEETWLPNTNQYTNSAILAAINALTTEVDLAEAIPIKARKTSLEHSPTVS
LKVEPGGEDLSPGELCQDEHPSKRLPLKKEVYCGGFLDVPQHPYSWSKPKQYVSSSLPAL
DWQLPSSSGPYSLQIDVQPKSHHRAHYETEGSRGAVKALAGGHPVVQLHGYMESEPLTLQ
LFIGTADDRLLRPHAFYQVHRITGKTVSTPSHEVLHNNNTKILEIPLLPENNMRAIIDCA
GILKLRNSDIELRKGETDIGRKNTRVRMVFRVHINQATGRTASLQVSSNPIECSQRSAQE
LPLVDKRSLETCPAHGGERMLIDGHNFQHDSKVVFVEKAQDGHHLWETEAKVDRDASKPN
SLLVEIPPYRSQRLSTPVHVNFYVCNGKRKRSQSQRFTYVPASAPTIKTEPRDDFDAPLV
CSQRGLSLHPKPYFPPQVLTPITTSDLRPCVVGGPYKPSPLPASSSPSTSPKLHDLSPPP
FSKSLSAGPQGQHRGQQSPISHVSIIQETPGRYQPLGFYPPSSSSSSSSPPTSQPSTPTD
GPFSPAVCVTPAQPGSGSASPGAEEHAKVPPRGRGSLQEDGSLPALAVSIKQEPQELDQM
YLDDVNEIIRNDLSSISVHSHA
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgccgaggaggaggcatatggctacttgccagacgtcagtctgtccctccca
ctgggcaacccgtgtcttccctcccagtaccacagcctccagtctagccccaccatatcc
gtatccgtctccgtcaccgagcctcacggttatgacgcccaggacgacatgagagcggcc
ggctactattcatccccccgcccgaacggggccccgaccctggagagccctcgcatcgag
atcaccgcctacggtcagtttactgaggacgaggtggaggagagcaacctccccgtcgcc
aagcgggtcaactccatagtgacgctgacgctcccctgcgccgacagctaccgcgacccc
agctgcctgagcccggcgagcagcatctcgtctcgcagctgccactccgacgcctcctct
tacgaatcgagcttctcctacaactacgacaactcgccccagaactccccctggcagtcg
ccctccgtgtcgcccaagggctccaccctcaccctgccgggcgacagctgcacctccggc
ggctccccccggcactccccctccacctccccgcgtacgagcgtgacagacgacagctgg
atgggccagcgtggctccaggcccaactccccgtgcggcgcaaagaggaagtacagcttt
aacggcagcagggcatcgcacaagcattacccgtactcgcccaacatctcccccgggctg
tccccacagacctcccctcgcctcagtatcacagaggagacctggctgccgaacaccaac
cagtacaccaactcggccattctggcggccatcaacgccctgaccacagaggttgacctc
gcggaggcaatccccatcaaagcccgtaaaaccagcttggagcacagccccacagtcagc
ctgaaggtggagccgggaggcgaggacctgagtccaggggagctctgtcaggacgagcac
ccctccaaacgcctgccattaaagaaggaggtctactgtggcgggttcctggatgtgcca
cagcacccttactcctggtccaagccaaagcagtatgtcagctcatccctgcccgctctc
gattggcagctgccgtccagctcggggccgtatagcctgcagatcgacgtgcagcccaag
tcccaccaccgagcccactacgagacggagggcagcaggggagcggtgaaggccctggcg
ggaggacacccggttgttcagctccacggctacatggagagcgagcctctgaccctgcag
ctgttcatcggcacggctgacgacaggctgctgaggccccacgccttctaccaggtccac
cgcatcaccgggaagacggtgtccaccccgagccacgaggtcctgcacaacaacaacacc
aagatcctggagatcccactgctgcccgagaacaacatgcgggccataatcgactgtgcg
gggatcttgaagctgcgcaactcggacatcgagctgaggaagggggagacggacatcggg
cgcaagaacacgcgcgtgaggatggttttcagagttcacatcaaccaggccacggggaga
acggcgtccttgcaggtctcgtccaaccccattgagtgctcccagagatcggcccaggag
ctgccgctggtggacaagcggagcttggagacgtgtcctgcccacgggggggagaggatg
ctcatcgacggacacaacttccagcacgactccaaggtggtgttcgtggaaaaggctcaa
gatggtcaccacctctgggagactgaggctaaggtcgaccgggacgcctcaaagcctaat
tcactgctcgttgaaatccctccctatcggagccagagactctccactccggttcacgtg
aacttctacgtctgcaatggcaagaggaaaagaagccagtcccagcgcttcacctacgtc
cctgccagtgccccgacgataaagacggagccacgcgacgacttcgacgcccctctggtg
tgcagccagcgcggcctctccttgcacccaaagccatacttcccccctcaggtcttgacc
ccgattacgacctctgacctcaggccgtgcgtggtgggcgggccttacaagccctcccca
ctgcccgcctcgtcctctccgagcaccagccccaaactgcacgacctgtcgccgccgccc
ttctccaagtccctctccgccggcccgcaaggccaacaccggggccagcagtccccgatc
tctcacgtctccatcatccaggagacgcccgggcgctaccagccactcggcttctaccca
cccagcagctcctcctcctcctcctcccccccgacctcgcagccctccacgccgacggac
ggccctttctctccggccgtctgcgtgacgccagcccagccgggcagtggcagcgccagc
ccaggagccgaggagcacgccaaggtgccaccgagggggcggggttcccttcaggaggac
ggcagcctgccggcgctggctgtcagcattaagcaagagccgcaggagctggaccagatg
taccttgatgatgtcaatgagatcatcaggaacgacctgtcgagcatctccgtccacagc
catgcgtag
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