Cyclopterus lumpus (lumpfish): 117739299
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Entry
117739299 CDS
T09199
Name
(RefSeq) semaphorin-6D-like
KO
K06842
semaphorin 6
Organism
clum
Cyclopterus lumpus (lumpfish)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
117739299
NCBI-ProteinID:
XP_034401516
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Position
11:21840524..21887783
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AA seq
1102 aa
AA seq
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MAPTYWPSPWQPPPWSMPLLLLVLSSCFLPESATPFPKDLEPINVVASEQSYQFPGFQGL
LQDNDTLRLGLDFQRLLRINHMLYIAARDHVFAVNLTTASEEFVPRLKLTWRSKDVSKCT
VRGKNSDECYNYVKVLVPRNDETLFACGTNAFNPTCRNYKMTSLQQVGDEVVGQARCPFE
SGQSNVGLFAGGDFYSATMTDFLASDAVLYRSLGDGRPVLRTVKYDSKWLREPHFLHAID
YGNYVYFFLSEIAVEYTALGKVVFSRVARVCKNDNGGSPRVLERYWTSFLKARLNCSVSG
ESFFYFDVLQSLTNVLQINQRPAVVGVFTTQANSIPGSAVCAFYMDNIEKVFNGKFKEQR
TGDSSWTPVPDEQVPRPRPGSCAGDGPASDFRSSVHFPDETLTFIKSYPLMDEAVPSVND
RPCFTRTSSRSKLTQIVVDVSAGPFKDRTVMFLGSDDGRVLKVLASTHPNDSFGSQLLED
IDVYNPSRCNVQGQEDRRVLGLELDKDHHALFVAFSSCVIRVPLGRCSRHGACRKACLAS
RDPYCIWLRTGSCANMAPGFKAGFDQDIEGDHSFPPDSCHADVLATTRNQESAADSAYGV
RRLPEMDQRAANVHYTLLIACVLVAFFLGAVLSGFLVSCYCGRSAAQRKDPEAPLPHALS
LRSLAKLNGLLDGQPKEDKLDVSTPRMYSSFIPNGRAEPPLHSPGLQGLQLGDPDLRLSQ
SLSQADGELSGLPTPDSTPELPIKDTKAPRHHQYEKNVNCNNASGSRSGLGFMAVVGNSV
SQQAFPVSDHHGLSNGVGASSTSLHLPEERKVLHEERATAAGGAPHHHHSQQSLPQAVVD
VSALDELLKHIHEVSASGTGGIKVLTSTSSSSLFPGPSLSSAGGGHHHNHHHHHPHHHTS
NNPHGPTRTHHYNQQQIPETESSPYYSTSTLPRDGLPKRPDAPTHNSTSSSASSSSSSSN
NPTSSTSIPSSSSSSSSTPLQQQVIPERPGGSGGVPVSRHLSQRHSLIKMGAVPRHHSFN
HRGGQPAHFLARMNTNSSSNGPPGPSAGACLTRQHSYSEGPHGQRAAVVRRTASLKPQVP
PKPLFLPNAAMSPVAGAGKYNY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggccccgacctattggccgtcgccatggcagccacccccctggtcgatgccgctgctg
ctgctcgtcctgtcttcctgtttcctgcctgagtcggccacgcccttccccaaagacctg
gagccaatcaacgtggtcgcctcagagcagtcctaccagtttccaggttttcaaggtttg
ctccaggacaacgacaccctgcgtctgggtctggacttccagaggttgttacgcatcaac
cacatgttgtacatcgctgcccgggatcacgtgttcgcagtgaacctgacgacggcttca
gaggagttcgtccctcggctgaagctgacgtggcgatccaaagacgtcagcaagtgtacg
gtcagagggaagaacagcgacgagtgctacaactacgtcaaggttctggtgccgcgcaac
gacgagacgctgttcgcctgcgggaccaacgccttcaaccccacctgccggaactacaag
atgacgtctctgcagcaggtcggtgacgaggtcgtcggtcaggctcgctgccccttcgag
tccggtcagtccaacgtgggactgtttgctggaggagatttctactcggccaccatgaca
gacttcctggccagcgacgccgtcctctacagaagtctgggggacggccggcccgtcctc
aggaccgtcaagtacgactccaagtggctcagagaacctcacttcctgcacgccatcgac
tacggtaactacgtctacttcttcctcagtgagatcgcagtggagtacaccgccctgggc
aaggttgtcttctctcgagtcgcccgggtctgtaagaacgataacggaggttcaccccga
gttctggagagatactggacctccttcctgaaggctcgtctcaactgctccgtctccgga
gagtccttcttctacttcgatgtcctccagtctctcaccaacgtgctgcagatcaaccag
aggccggcggtggtcggggtcttcaccacccaggccaacagcatccccggctcggctgtc
tgtgcgttctacatggacaacatcgagaaggtcttcaatgggaagttcaaggagcagcgg
accggcgactcgtcctggactccagttcctgacgagcaggtccccagacccagacccggt
tcgtgtgcgggcgacggtccggcgtcagacttcaggtcgtcggttcacttccccgacgag
acgctgacattcatcaagtcgtatcctctgatggacgaagcggttccctctgtcaacgac
cggccctgcttcaccaggacctccagcaggtccaagctgacccagatcgtggtggatgtg
tcggccggccccttcaaggaccggaccgtgatgttcctgggctccgacgacggccgagtc
ctgaaggtcttggccagcacgcatcccaacgacagcttcgggtctcagctgctggaggac
atcgacgtctacaacccatccaggtgcaacgttcagggtcaggaagacaggagggttctg
ggcctggagctggacaaggaccaccacgccctgttcgtggccttcagcagctgcgtcatc
cgggtgccactcggccgctgcagccgacacggagcctgcaggaaagcctgcctggcctct
cgtgacccatactgcatctggctgcggactgggagttgtgccaatatggcgccgggtttc
aaggccgggtttgaccaggacatcgagggcgaccactcgttccctccagacagctgccac
gctgatgtgttggcaacgacacggaaccaggagtctgcagccgactctgcctacggtgtc
cgccgtctcccggagatggaccagcgcgccgccaacgtgcactacacgctgctgatcgcc
tgcgtgctggtggccttcttcctgggcgccgtcctgtcgggcttcctggtgtcatgttac
tgcggccgcagcgccgcccagcggaaggaccctgaggcaccgctgccgcacgccctgtcg
ctgcggtcgctcgccaagctcaacgggctgctggacggacagccgaaggaggacaagctg
gacgtgtccacgccgaggatgtacagctccttcatccccaacggccgggcggagcctccc
ctccacagccccgggctccagggcctgcagctgggggaccccgacctccgcctctcccag
tccctgtctcaggcggatggagagctgtccggtctgcccacgccggactccaccccggag
cttcccatcaaggacacgaaggccccgcggcaccatcagtacgagaagaacgtgaactgc
aacaacgccagcggctccaggtccggtctggggttcatggccgtggtcgggaattcggtg
agccagcaggcgttcccggtctctgaccaccatggtttgagcaacggagtgggcgcctct
tcgacttcgctgcacctccctgaggagaggaaggtcttgcatgaggagcgagcgacagca
gcaggaggagccccccatcaccaccactcccagcagtccctcccccaggcggtggtggac
gtgtcggcgctggacgagctgctcaaacacatccatgaggtcagcgcgtcggggaccggc
ggcatcaaggtcctcacctccacctcttcgtcctccctgttccccgggccctccttgtcc
tccgccggaggaggacatcatcacaatcaccaccaccatcatcctcatcatcataccagt
aacaatccccacggcccgacccgcacccaccactataaccagcagcagatcccagagaca
gaatcctctccgtactacagcacctccacgctgccgagggacggcctccccaaacgccca
gacgctcccacgcacaactccacctcgtcctccgcttcttcctcctcttcgtcctccaac
aatcccacctcctccacctccatcccttcctcctcctcttcctcctcctccactcctctc
cagcagcaggtgattccggagagacccggcgggagcggcggcgtccccgtgtctcgccac
ctctcccagcgccactcgctcatcaagatgggtgccgtgccgcgccaccacagcttcaac
catcgaggggggcaaccggcgcactttctcgccaggatgaacaccaacagcagcagcaac
ggcccccctggtccgagcgccggcgcctgcctgacgcggcagcacagctacagcgagggg
cctcacgggcagcgggcggcggtcgtccggagaacggcgtcgctcaaaccccaagtcccg
ccgaaaccgctgtttcttcccaacgcggcaatgtcaccggtagcaggggcgggaaaatac
aactactga
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