Cyclopterus lumpus (lumpfish): 117739410
Help
Entry
117739410 CDS
T09199
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117739410 (cica)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117739410 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
117739410
NCBI-ProteinID:
XP_034401688
LinkDB
All DBs
Position
11:2844476..2876006
Genome browser
AA seq
2504 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGAGDAPEGGEKRDSDENRDRSRSPQNRTPSSSFSSNS
HFESSQTDPIRARGTSEGEGLHRLSETTVSLVMDSGKLVTSSDDRSGRSAVSVSSHSDSG
GSSCSNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCLSATGNHSNPSSTTPPHLP
LSGGVINHGSTGSGKDICVPHPVGNGQSRSLINDFHSRTTGREGPQDGSPGPPTLTLAGD
RERPAGVEGARDAERTSPVLLPRCSSTDTASEHSADLEVVGDTHTLTQMSTHALPSLPDA
LSDALAKGMKNQRVLARQLRRRSDEVGGDERRDEGGISDLVFRAGVVRKVSGEFGSLEVQ
LNGEKTLCRYPYQHDSPPGVVDIILDAPPPGVHPIAIGTRVCVPFGNEEGSEGQWQWYRE
GVVTQVDTHPAVANRYRVLLSEERPDSVGEEEDGRGTAGGTQAVWVSRQTLRLLVPPWDL
DLPSGGGQDGEEGFSDKELEREDREEIDVEQEVCRLSRGMTPGVGSVLGRGISYPGMVPV
SSTLGHSITSPVTPASVLSLAPGREWEIEKDLERERDLQRIQERERERERERENSVKQQQ
QQQHQQQQQQHHPYMPLTPEEDMEVSHFNMLPIGAIIPGAQPMALPLHRHIISKPPPGYL
NPHLSVVRGIGVPPTHLALNPHPPPSPVLLGLDTATATAAAVITIPQLPPLPPISSSTAS
SSRVEKAQGGCSSSGGAGGGGGSGSGSTSSSSSRSRTPLTAAQQKYTKGDVVCTPTGIRK
KFNGKQWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGSRERGGASSTGTLTPSDL
RMSGGRASSEFDWDETSRESSEASSRGGDSRPRLALPSLLPQDLSRFDFDECEAATMLVS
LGGSRSGTPSYSPISNQSPFSPTPSPSPSPLFGFRPANFSPITAPSSLTPRRHRQLSGTK
IGTPGVDRERHLSGIVPTFQTNLTFTVPMSPSKRKLDTHPPPPLPAIQDYQTKPELVGMM
GDPTLGHNPAAFRVLSPQSQPTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPTPPSPL
PQEPSPRRIVPLRDSPVIVRNPDVPLAKFSDGPLGRRERSRSREHSLPQHTALPGLQVPV
PINGATTNGAVLLRNPSSTLVLVTSSSSLTPATGGHAALSSTSAMPTSSGSILSSSGSGG
RERERKPEGHQDASGGGLPQPVACHPTPTALLPLILPAESPHPAPRKQIIMGRPGTVWTN
VEPRSVPVFPWHSLVPFLEPSQSGAAPQPADGQQLVNQSKEPRCGVALVSDGRTGPPDLE
RGSTPCPPPTNDNPPTDRGGADSETESDTDDPFSPGVANDAAPSAGTLKRRTQSLSALPK
DGDRKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPNEKQQY
HDLAFQVKEAHFKAHPDWKWCNKDRRKSLSEGRGLQKESRERSMSESIDPHPESQVPEGG
KGGGGSCWPGGSERRVGLFAGQHPRPRAFSQSAVHTLEQRERDLEKDDGASLFRRQPPPQ
ALYKGGLSEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQHG
FQPVARSSLPSSSPSTPHSDSTSAKWNGGGGGGGDEGSEKKRKRDGGEEGSEGRSKREEA
AADGGRGGGGGGGVSSLPTAVWTSSGPAPLALAQKGLTQVLGAVHTAPTMVTNVVRPVAS
MPVLMASKPVEGAVAGNSQPQDKKATLLHGEGGPQHLPIAAGGGYLSSSSSPGPVSVTPM
EGSGLVTSLVLGGSFPTAQPHAQTPLPVLQTLLHPTGATSTLTPPAGPKPLAQGQYILPT
EGPSSPQLTHQQILSLPANADPANGMHSGAGIRVASVSPGTRVQTQSPVLQSKMLVPMAT
VRTGSTPPHPSISLVAPPLPMQNGSVTGNKIIQIAPMPVVQTTVHPCGAAEVHPGSPFPV
SMATVMAPGAAPPQTVLLTSPPTRITYVQSGPVVTATTPQQATPAPSPAYLPSSLATLGF
TAIAPAAQTLVQPLLALAPPLSCQPQTPTGQASGDAGLQVQTTIYSAPTVALPAGKVSVT
TLPPAVAAPAQDRMSPSSPTATLRLYAAEEVELKVEVKKENLTDGATEEGWSSCAASSSF
ATCAINVTVKKEEDIGFHIKEENLRDGHGGEKQCDGDMEQERGVKESSERKGGRKMDRED
HSMDNGSKEDGPRTPPLPPPGLDPPPPLPVEREHPSASKKTKFRPPPLKKTPDSLEKVLS
ESYFEERFAELPEFNPEEVLPSPTLQSLATSPRAILGSYRRKRRNSNELEVTAEDPGSPK
RKTRRLSSCSSEPNTPKSAAKCEGEIFTFDRAGTEGEDLIGDLDRVPYSSLRRTLDQRRA
LVMQLFQEHGFFPSAQATAAFQARYSDTFPTKVCLQLKIREVRQKIMQTAAPGTFEPGVL
AGLAEAGPAPSHSSSFNQSAREDGGAEQQGDKVKSPDETKSERS
NT seq
7515 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgataaaaaagcagggccgtcgctctcctccctccacccgggccaaggggggg
aagcgtcgcggagcgggggatgccccagaaggaggggagaagagagactcagatgagaac
agagacagaagcagatccccacaaaacagaacaccctcctcttcattttcttctaattca
cattttgagtcgtcccagacggacccaatcagagcacggggcacttcagagggagagggt
cttcacaggctgtcagaaacgacagtatcactcgtgatggattctgggaaattagtgaca
tcctcagatgatagatcagggaggtcagctgtgagcgttagcagccacagtgacagtggt
ggtagtagttgtagtaacagtagtacaccaagcgctaacaacagtccaaaccccgcctcc
agccggaaaacggccaccttcaaggcccgcgttcccaagaagaagtacacctctgaacac
tgcttgtctgctactggtaaccatagcaacccttcctccaccacgcccccgcatcttcct
cttagtggtggggtcattaaccacgggtcaacaggttcaggaaaagacatctgtgtccct
caccctgttggcaacggtcaaagcaggagcctgattaacgacttccacagcaggaccact
ggcagggaggggcctcaggatggctccccaggaccccctacgctgacgctggcaggggac
agggaaaggcccgcaggagttgaaggggcaagagatgcggagcgaacgtcacccgtcctc
ttaccccgctgctcctcaacagacactgccagcgagcactcagctgacctggaggtagtt
ggcgacacacacaccctcacacagatgtctacacacgcactacccagtctccccgatgca
ctatctgacgccctcgccaaaggaatgaagaatcagcgcgtcctcgcccgacagctcagg
agaagaagtgacgaggtgggaggagacgaaaggagggacgaaggggggatttcagacttg
gtgttccgggctggagtggtgcgtaaggtcagcggtgaatttggaagcctggaggttcaa
ctgaatggtgagaagacgctgtgccgttatccatatcaacatgacagccccccaggggtg
gtggacattatcttagatgccccaccacctggtgtccatccaatagctattggcacccgt
gtctgcgtaccatttggaaatgaggagggcagcgagggccagtggcaatggtacagagaa
ggtgtggtgacccaggtggacacacaccctgcagtggctaaccgctaccgtgtcctgctg
tctgaggaaagacctgattctgtgggcgaggaagaggatggcagagggacagctggtggg
acccaggcagtgtgggtctcccgacagacactccggcttctggtgccaccttgggatctg
gatctgccgtctggagggggacaggacggagaggagggattcagtgacaaggaactggaa
cgagaggacagggaggagatagatgtggagcaggaggtgtgtcgtttgagccgggggatg
acacctggcgtggggtcagtgttgggaagaggaatatcctacccaggtatggtccctgtt
tcctccacattaggccacagcattacctctccagttaccccagcttcagtcctcagcctg
gctccaggtcgagagtgggaaattgagaaagacttagagagggagagggacctccagaga
atacaggaaagagagagggaaagagagcgagaaagggagaacagtgtgaagcagcagcag
cagcagcagcaccaacaacagcagcagcaacaccacccatacatgccactaacccccgaa
gaagacatggaggtatctcactttaacatgcttcctataggggcgatcatacctggggcc
caaccaatggcacttcccctgcaccgccacatcatctctaagcccccgcctggctacctc
aatccccacctttctgtggtgcggggcatcggggtcccccctacccatcttgcattgaac
ccccaccctcctccttcacctgtcctattaggccttgacacagcaactgcaacagctgca
gctgtcattaccatccctcaacttccccctctccctcccatctcctcttccactgcgtcc
tcctccagagtcgagaaggcccaaggaggatgttcttccagtggaggagctggtggtggc
ggtggatccggatcaggttcaacctcctcctcctcctcacgttcacgcaccccactgaca
gctgcccagcaaaagtacacaaagggagatgtggtgtgcacgccaacaggcatccgtaag
aaattcaatgggaagcaatggaggaggttgtgctccagggaaggctgctcaaaagagtcc
cagcgccgaggatactgctccagacacctctcaatgaggaccaaggagatggaagccagt
ggaggtagccgggaacggggtggagccagcagcacagggaccctgactccctctgacctt
cgaatgagcggtggaagagctagctcagagtttgactgggatgagacgtcacgcgaaagc
agtgaggccagcagccgtggaggagactcccgcccccgcctggcccttccctctctgctc
ccccaggacctctctcgttttgactttgatgagtgtgaggccgcgaccatgttggtctcc
ctagggggctcccgctcaggcacaccctcatactcacctatctctaaccaatcgccgttc
tcacctaccccatcaccttcaccctctccgctcttcggctttcgtcctgccaatttcagc
cccatcactgctccttcctcacttactccacgccgccatcgccagcttagcggcactaag
attggtacaccaggtgttgatcgagagcgccacctgtctgggattgtgcccacgtttcag
accaatctcacttttacagtccccatgagccccagcaaaaggaagctcgacacccatcca
cccccaccgctgcctgcaatccaggactaccagaccaaacctgagctggtgggcatgatg
ggagacccaaccctgggccacaaccctgccgccttcagagtcctctccccccagagtcag
cccacaaccccctcctcactttcctttccccggcctcgtagcgccaccagcaggccacca
tcctccgctgcctccactccaccacccatgctggtctctcccactcctccctccccgctg
ccccaggaaccctccccacgacgcattgtgccgctccgtgattccccagtcattgtccgc
aacccagatgttcccctggccaagttctctgatggcccattggggaggagagagaggagc
aggtctagagagcacagcctgccccaacacacagctctcccaggcctccaggtccctgtt
cccatcaacggggccaccaccaacggtgcagttctcctgcgcaacccttcatccacactc
gtcctggtcacttccagctcgtcactgactccagccacagggggccacgctgccctgtcc
agcacctccgcgatgcccacttcatcaggctccatcctgtcctcctctggctctgggggg
cgagagagggagaggaagcccgagggacaccaggatgcctccggcggggggctgccacag
ccggtagcctgtcacccaacgccgactgctttgctgccgctcatactgccagctgagtcg
cctcatcctgctccgcgcaagcaaatcatcatgggacgtccagggacggtttggaccaac
gtggagcctcggtccgtgccagtgttcccttggcattcgctcgtccctttcctggagccc
agccaatcaggagcggctccccagcctgccgacggccaacagcttgtcaatcagagcaaa
gagcctcgttgtggcgtggccctggtgagcgacggacggaccggccctcctgacctagag
aggggatcgacgccatgccctcccccgaccaatgacaatcctcctacagacaggggcggg
gctgacagcgagacagagagcgatacagacgacccgttctccccgggcgtggccaacgat
gcggcaccctccgccggcaccttgaagagacgcacgcagtctctcagcgccctgcccaag
gacggggacaggaagagggagaaagaccacattcgccgaccaatgaacgcattcatgatc
ttcagcaagcgccaccgggccctagtgcaccagcggcatcccaaccaagacaaccgaaca
gtcagcaagatcctgggggagtggtggtacgctctggggcccaacgagaagcagcagtac
cacgatctggcctttcaggtgaaagaggcccacttcaaagcccacccagactggaaatgg
tgtaacaaggaccgcaggaagtcactgtcggagggccgtgggttgcaaaaggagtcgcgg
gagaggagcatgtcagagagcatagatccccatccggagtctcaggtgcctgaggggggg
aagggaggaggaggctcgtgctggccagggggatcggagcgccgagtggggctgtttgcg
gggcagcacccgcgtccccgagccttttcccagagtgccgtgcacaccctggagcagagg
gagagagacctggagaaggatgatggggcgagtttgtttcgccgccagcccccacctcag
gccctgtacaagggcgggctcagtgaggacgtgaccagcgacgaagagcgcatggtcatc
tgtgaggaagagggagacgacgatgtcatggaggactcctgtcctgaaggctccattgac
ctcaagtgtaaagagagagtgacggacagcgatgaagacgaaccagacggacagcatggc
ttccagccagtggctcgctcctctctcccttcttcctctccctccacccctcactccgac
tccacctccgctaaatggaacggcggaggaggaggaggaggtgacgaagggtccgagaag
aagagaaagagagacggaggagaggagggcagcgagggaagatccaagagagaagaagca
gcagcagatggaggtagaggaggaggaggaggtggtggggtctcctctctacctaccgca
gtctggacatccagcggcccggctcccctcgccttggcccagaagggtttgacacaggtc
ctcggcgccgtccacacggcccccacaatggtgactaatgtggttcgacccgtcgccagc
atgcccgtcctcatggccagcaagccggtggaaggagccgtcgccggtaactcccagcct
caggacaagaaagccactctcctgcatggagaaggtggacctcagcatctgccaatcgct
gcgggtggtgggtacctgtcctcatcctcctcccccggtccagtcagtgtaactcccatg
gagggcagcggcctggtcactagcctagttctgggagggtcctttcccaccgcccagccg
cacgcacaaacccccctacctgtcctccagaccctgctccaccccaccggcgccacctca
actctcacacctcccgccggccccaagccgctagcgcagggccaatacatcctgcccacc
gagggcccctcctcccctcaactcacccaccagcaaattctctccctgcccgccaatgcc
gacccggccaatggcatgcactcaggggcgggcatcagagttgcatcagtcagtcccgga
accagagtccaaacccagtcgccggttttgcagagcaagatgttggttcctatggcaaca
gtgagaacagggtctactcctcctcatccctctatttctctggtcgcgccgcctcttcct
atgcagaacggctcggtgacaggaaacaagatcatccagatcgcgccgatgcctgtggtc
cagaccaccgttcacccttgcggcgcagcagaagtgcatcctgggagcccctttcctgtt
tccatggcaacagtgatggctcccggtgccgcgcccccgcagaccgttcttctgacctct
ccacccaccaggatcacgtatgtccagtctggccccgtagttaccgcgacaacgccccaa
caggccacgcccgctccgagtcctgcgtatctcccatcatcactggcaaccctgggcttc
accgccattgccccggcggcacaaaccctggttcagccactgttggctctggccccgccc
ctcagctgtcaaccacagacccctacgggccaggcctcaggggacgctggtctccaggta
caaaccaccatctattctgcaccaaccgttgcactgcccgctggcaaggtttccgtgacg
actctgccccccgcggtggcggccccggcccaggacaggatgagcccttcctctccgacg
gcgacccttcgactttacgcagcggaagaggtggagctgaaggtggaggtgaagaaggag
aacctgacagatggtgcgactgaggaagggtggtcgagctgtgctgccagctcctcgttt
gccacctgtgcgattaatgtcacagttaaaaaagaggaggacatcggctttcacatcaaa
gaagaaaatctccgagatggacacggcggagagaaacaatgcgacggggacatggagcaa
gagagaggggtgaaggagagcagtgaaagaaagggaggccggaagatggacagagaggac
cacagcatggacaacggcagcaaagaggatggacctcgcacccctcctttgccgcccccg
ggtttggaccccccaccccctctccctgtggaaagagagcacccctctgcctcgaagaag
accaagttcagacccccgccgctcaaaaagacgcccgactctctcgagaaggtcttgtcg
gagtcgtactttgaggagcgctttgccgagcttccagagttcaacccggaggaggtcctg
ccttcgcccactctgcagagtctggccacttcgccgagagccatcctgggaagctaccgc
aggaagagacgcaactccaacgagctggaggtgactgccgaagaccccggctccccgaag
aggaagacccgtcgcctctccagctgcagctcggagcccaacacccccaagagcgcagcc
aagtgtgagggagagatattcaccttcgacagagcgggtacagaaggagaggaccttatt
ggagacttggacagggtcccctactcgtctctgcgcagaactctggatcagcgccgggcc
ctggtcatgcagctgtttcaggagcatggcttctttccctcagctcaggccaccgccgcc
ttccaggcacgctactcggacaccttccccaccaaagtgtgtctgcagctcaagatccgc
gaagtccgtcagaagatcatgcagacagccgcgcccggaaccttcgagccgggagtgttg
gccgggttagccgaagccggccccgccccgtcccacagctcctccttcaatcaatcagcc
cgggaggacggaggggcggagcagcaaggagacaaagtcaagagccccgatgagacaaaa
agcgagaggtcctaa
DBGET
integrated database retrieval system
