Cyclopterus lumpus (lumpfish): 117739534
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Entry
117739534 CDS
T09199
Name
(RefSeq) POU domain, class 2, transcription factor 1
KO
K09364
POU domain transcription factor, class 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117739534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117739534
03021 Transcription machinery [BR:
clum03021
]
117739534
Transcription factors [BR:
clum03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
117739534
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
117739534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
HTH_31
Motif
Other DBs
NCBI-GeneID:
117739534
NCBI-ProteinID:
XP_034401888
LinkDB
All DBs
Position
11:2722717..2774305
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AA seq
781 aa
AA seq
DB search
MFVPLPVPFVFQRTASDFSAWRLKSSLAPRSSPDIRMSKAAEDEKPVAEYPGDSSDSNRN
SPDDQVQPMKTSPFSVSPTPAGSKGKSEESSEMTHSTVPPAPPSQQQQQQQQQQQQQQQQ
QQQQEQQQQQQQQQRLQQQQQQQQQQHHHTQLMLAGSQLAGLAALLPAQQQLLLQQAQAQ
LLAAAVQQSNAAHAAHAAHAAHAAHAAAAQQQANQQQQNQAQSQQQHTKQEQAVQVPPPP
QLALSQPIQLTAQDIQQLLQLQQLVLMPGHPLQSPAQFLLSQPTQVQQSQQGLLSTSNLI
QLPQQSSGGLLTTPPRLGLQAQREKSSDVVIGGSGSSLVATGSSGVVTSVGAPSASSGAI
GSSLTPGLTPGGHGGHLGEEPSDLEELEQFARTFKQRRIKLGFTQGDVGVAMGKLYGNDF
SQTTISRFEALNLSFKNMCKLKPLLEKWLGDAENMAIDSMLPSPSSLSSPMLGIEGLSGR
RRKKRTSIETNVRVALERNFHMNQKPTSEEILLMADQLTMEKEVIRVWFCNRRQKEKRIN
PSSSTTPPLSSQTSPVVTHKALCYSPHMISSHGLSQVTTCLSTTAASSSASCPMTPVSSA
AVGSTSSSVTPPLHSTAIPAPPSLGAHVLNTGNTMMGVSTGMNQALIGSNPLATMQALAA
SSGQLPISGLEGGAAHMFLGGPGCPAIPHSLRPSLFLNRPTLLPMATSSMATPSTPAMGL
ISGVGGCGPRLSFCHSPPPGTSDLMSPSSCPEESASPCSSPASFCSFSEASPPPMGGAMA
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtccccctgccggtccccttcgtctttcagagaacagcgtccgacttcagcgcc
tggagactcaagtcctcgctggctccgcggtccagccccgatatcaggatgtctaaagca
gcagaggatgagaagcctgtggctgagtatccaggggacagttcagactctaacagaaac
agccctgatgaccaggtccagccgatgaaaacaagccccttcagcgtctctcccacacca
gctggcagcaagggaaagagcgaggagagctctgagatgacccacagcaccgtccctcct
gctcctccctcccagcaacagcagcagcagcaacaacaacaacaacaacaacaacaacag
caacaacaacaagaacaacaacagcaacagcagcagcaacagcggctacaacagcagcaa
cagcagcaacaacaacaacaccaccacacacagctgatgctggctggcagccagctagca
gggctcgccgctctcctcccggcccagcagcagctgctcctccaacaggcccaggctcag
ctcctggcggccgctgttcagcaatccaacgccgcccacgccgctcacgcagcccacgcc
gcccacgccgcccatgccgccgccgcccagcaacaggccaaccagcagcagcagaaccag
gcgcagtcccagcagcagcacaccaaacaggaacaagctgtccaagtcccgcctccaccg
cagctggccctgtcgcagccgatccagctcacggcccaggacatccagcagctgttgcag
ctccagcagctggttctgatgccgggtcatcctctccagtccccggcccagttcctcctg
tctcagcccacacaggtgcaacagtcgcagcagggtttgctctcgacatcaaatctgatc
cagctacctcagcaaagctcagggggactactgacaaccccacctcgcctgggactccaa
gcacagagggagaagagcagcgatgttgtgatcggtggaagtggcagctccctcgttgcc
accggcagcagcggtgtcgtgacgtctgtcggagccccctcagcgtccagcggcgccata
ggttcctcgctgacgcccggattgactcccggaggtcacgggggtcacttgggggaggag
cccagcgacctggaggagctggagcagttcgcccgcaccttcaaacagcgacgcatcaag
ctgggattcacccagggggacgtcggcgtggcgatgggcaaactgtacggcaacgacttc
agccagaccaccatctcccgattcgaagctctcaacctgagctttaagaacatgtgcaag
ctgaagccgctgctggagaagtggctgggtgatgcagaaaacatggccatcgacagcatg
ctgcccagcccgtcctctctctcctcccccatgctgggcatcgagggtctatccggccga
cgcaggaagaaacgcaccagcattgagaccaacgtgcgagtggccttagagcgcaacttc
cacatgaaccagaagcctacctcggaggagatcctgctcatggcggaccagctcaccatg
gagaaggaggtgatccgcgtgtggttctgcaaccgcaggcagaaggagaaacgcatcaac
ccctccagcagcaccacgccgcccctgtccagccagacctcgcccgtcgtgacacacaaa
gccctctgctacagcccgcacatgatatcgagtcacggtctgtcccaggtcaccacctgt
ctcagcacaacagccgcaagctcttcagcatcctgccccatgactcccgtcagttccgcc
gcagtgggctccacctcttcttctgtgaccccgccccttcacagcacagctatccccgcc
cctcccagcctcggggcccacgtgctgaacaccgggaatacaatgatgggagtaagcaca
gggatgaaccaggccctcattggcagcaaccccctggctaccatgcaagccttagcagcc
agcagcggtcagctgcccatctccggcctcgaggggggagcggctcacatgttcctgggc
ggacccggatgtcccgccataccccactccctccgcccctccctcttcctcaaccgcccc
accctcctccccatggcgaccagctccatggcgacgccctcaacgcctgccatgggactg
atcagtggcgtcggtgggtgcggcccgaggctctccttttgccactctccacctcctggc
accagcgacctcatgagcccgtcctcgtgccccgaggagtccgcgtctccttgttcaagt
cccgcctctttctgttccttcagcgaagcctcgcctccgcccatgggaggggccatggcc
gagtga
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