Cyclopterus lumpus (lumpfish): 117739593 Help Entry 117739593         CDS       T09199                                  Symbol htt Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism clum  Cyclopterus lumpus (lumpfish) Brite KEGG Orthology (KO) [BR:clum00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:clum03019]     117739593 (htt)    04131 Membrane trafficking [BR:clum04131]     117739593 (htt)    03029 Mitochondrial biogenesis [BR:clum03029]     117739593 (htt) Messenger RNA biogenesis [BR:clum03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      117739593 (htt) Membrane trafficking [BR:clum04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     117739593 (htt) Mitochondrial biogenesis [BR:clum03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     117739593 (htt) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_2 HEAT_EF3_N HEAT_ECM29 Motif Other DBs NCBI-GeneID:  117739593 NCBI-ProteinID:  XP_034402000 Ensembl:  ENSCLMG00005009329 LinkDB All DBs Position 1:12010302..12043975 Genome browser AA seq 3174 aa AA seqDB search MATMEKLMKAFESLKTFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL SPGSRTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELY KEIKKNSASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRITKRQEETVQETLAAA MPKIMAALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRTSYFYTWL LNVLLGLLVPVDEEHPTHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVTRKEADVQPTP EQLLQVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITAGSILHGTVFRQDT ESRARSSSILELIGKMLSGEEEGLDDDAERTEVTTGVFTATVVGADGSSAAQVDIITEQP RSSQHTLQPGESVDLSASSEQGGGGTSASDTPESPNDNEEEMLSRSSSGGANITPETADY TTPETEGGPLGEGATLLGTNDRSLPPSDSSQTTTEGPDSAVTPSDVAELVLDGSESQYSG MQIGTLQDEEEEGAAPSSQEEPPEPILQSALALSKPHLFDGRGHNRQGSDSSVDRFIPKD ESAEPEPDNKPSRIKGPIGHYTDQGVEPLVHCVRLLAASFLLTGQKNGLTPDKEVRVSVK ALAVSCVGAAAALHPEAFFNSLYLEPLDGVPVKEQQYISDMLGLIDHGDPQIRGATAILC AAIIQAALTKTRYNIHTWLASVQRATGNPVSLVDLVPLLQKTLKDESSVTCKMACSAVRH CLMTVCSSTLSELGLQLMINLLALRDSSYWLVRTELLETLAEMDFRLVNFLERKTETLHR GDHHYTGRLRLQDRVLNDVVIRLLGDDDPRVRHVAASAVSRLVSRLFYDCDQGQVDPVVA IARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSNNVSDVTVENNLSRVVTAVSHA FTSSSSKALTFGCCEALCLLAIHFPVCTWSTGWHCGYVSSSSSFSSRSSLSRSRGRALSL PSSAPASSTTSSSAPDNERRTLTVGMANMVLSLLSSAWFPLDLSSHQDALMLSGNLLAAV APKCMRNPWAGEEEGSSGSTNPNPNKMDEPWAGLSERSLVAMVEQLFSHLLKILNICAHV LDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEKDAAEPSAAPMSPKKSNEINTGRPADGT GSTAINKSTTFGNFYHLPPYLKLYDVLKATHANYKVTLDLHSSQEKFGGFLRATLDVLSQ LLELATLHDISKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNLASQCEGILSGPS RSQGKALRLGSSNLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEEEQDTSGWFDVTQK ASNQLRYNIANATRNRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQVLDLLAQLV QLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLVLLSYERYHSKQIIS IPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQKEVVVSMLL RLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPLISKQQMHLDSPEALGVLNT LFETVAPSSLRPVDMLLKSMFTTPVTMASVATVQLWVSGIMAVLRVLVSQSTEDIVLSRV HELSLTPHLLSCHTIRRLHQQNLSPSDPPTADTLVNQEPIGEAQKAPPEETFARFLLQLV GVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFKSGMFRRITAAASRLLKGEGG GGQTGTEAALFYPLEGLNSMVQCLITTHPSLVLLWCQVLLIIDYTNYSWWAEVHQTPRGH SLSSTKLLSPHSSGEGEEEKPEMRLAMVNREIVRRGALILFCDYVCQNLHDSEHLTWLIV NHVRDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLSTPTMLKKTLQCLEGIH LSQSGSLLILYVDKLLSTPFRVLARMVDTLACRRVEMLLAETLQNSIAQVPVEELDRIQE YLQTSGLAQRHQRFYSLLDRFRATVAGTSSPTAPVTTHPLDGDPPPAPELVSADKEWYVA LVKSQCCLRGDVSLLETTELLTKLPPTDLFDIMSCKEFNLSLLCPCLSMGMQRLARGQGS LLLETALQVTLERLAGVTGSLPVPHQSFLPPAQSQPYWNQLAAVYDEPGFYPRVLSLCRA LSQYLLNVSQLPSSLHISSDKEHLITTFTCTAAEVVAWRLLQDKLPLSVDLQWALSCLCL ALQQPCVWNKLSTPEYTTHTCSLVYCLHLIIVAVAVSPGDQLLYPEKKKTKSERDDGDEV DSAHADHMCEWQACEIMAELVEGLQSILALGHHRNNAFPPFLTPTLRNIVISLSRLPLVN SYTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKDVFREFLYRINTLGWSSRTQFEE TWATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAVQAITSLVLSAMTLPTAGNPAVS CLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVHTHHPYHAWDPVPSLSA ASPAGTLISHEKLLLQINTERELGNMDYKLGQVSIHSVWLGNNITPLREEEWGEDEEDEA DTPAPTSPPLSPINSRKHRAGVDIHSCSQFLLELYSQWLIPSSPSNRKTPTILVSEVVRS LLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPAICKAAAVLGMDKAIAEPV CRLLETTLRSTHLPSRMGALHGLLYVLECDLLDDTTKQLFPTVSEYLLSNLRAIAHCVNL HNQQHVLVMCAVSFYMMENYPLDVGAEFMAGIIQLCGVMVSASEDSTPSVIYHCVLRGLE RLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMYTAVLASGSDVTGVRGQ VDSAVAEAVGVTAGHVGFSSGKEKASPASRPHSDPQAPDSESIIVAMERVSVLFDRIRKG FPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMAAVVYKVFQTLHATGQ SSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLPHVISRMGSSEVVDV NLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPGSPYYQLLGCLQSIHQDTSL NT seq 9525 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaaattgatgaaggccttcgagagtctgaagacattccagcagcaa cagggaccgccgaccgccgaggagctcgttcagaggcagaaaaaggaacaggctaccaca aagaaggacagggtcacacactgcctgacaatatgtgaaaacattgtggctcagtctctg agtcctgggagcagaacgtctccagagtttcagaaattgctgggcatcgccatggaaatg ttcctgctctgcagtgatgacagtgaatcagatgtccggatggtagctgatgagtgcctg aacaaaatcatcaaagctttgatggactcaaaccttcctagactgcagctggaactgtac aaagaaattaaaaagaacagtgcctctcggagtctgagggcagctttgtggaggtttgct gagcttgctcacctcatcagaccacagaaatgcagaccctacctggtcaatctgttgcca tgcctctctcgaatcaccaagcggcaggaggagacagtccaggagactctggcagctgca atgcccaagatcatggccgccttggggcacttcgccaatgatggcgagatcaaggtgctg ctaaagtcgtttgtggccaacctgaagtccagctcccccaccatccgacggacagcagcc agctcagccgtcagtgtgtgccaacactccagacgcaccagctacttctacacatggctc cttaatgtgctgctcggtctgctggttccagtggatgaagagcaccccacccacctaatt ctgggggtgctgttaacccttcgctacctgatgcctctgctgcagcagcaagtcaacacc accagcctcaaaggaagttttggagtcacgaggaaggaggctgatgtacagccaacacct gaacaactgctgcaggtgtacgagctgaccctacactacacacagcactgggatcacaac gtggtcactgcagcgctggagctcctgcagcagatgttcaggactcccccaccagagctt ctgcacatgctcatcaccgcaggcagcattcttcatggcacggttttccgccaggacaca gagagccgcgcgcgctccagcagcatcctcgagctcattggtaaaatgctttctggggaa gaggaggggttggatgatgacgccgaaagaacagaggtcaccactggtgtcttcacagca acagttgttggtgcagacggctcctctgcagcccaggtggacatcatcaccgagcaaccg cgctcctcccagcataccctgcagcctggcgagtctgtggacctcagtgcctcctcagag caaggcggaggagggacatctgcatcagacactcccgaatcacccaatgacaacgaggag gaaatgctgagtcggagctccagcggtggggccaatattactccagagacggctgactat accacaccagagacggagggagggcccttgggagaaggcgcgactctgctaggcactaac gatcgctcacttccacccagcgactcctcccagaccaccacagagggaccagactcggct gtcacaccttcagatgtagcagagctggtgctggatggcagtgagagccagtactctggg atgcagatcgggacattacaggatgaagaagaagaaggagcagcaccttcctcccaagaa gaaccaccggaaccaatcctgcagtcagcacttgcactgagcaaacctcatctcttcgac ggccgaggtcacaaccggcaaggttcagacagcagtgtggaccgcttcataccaaaggac gaatcggctgaacctgaacccgataataagccatctcggataaagggtccaattggacat tatactgaccagggggtggagccgctggtgcactgtgtacggcttcttgctgcttccttc ctactgacgggacaaaagaatggtctgacccctgacaaggaggtgcgagtgagcgtgaag gctctggcggtcagctgtgttggggcagcagcagcgctgcaccctgaagccttctttaac tccctctacctggagccgctggacggcgttccagttaaagagcagcagtatatcagtgac atgctgggcctcattgaccatggggacccacagatccgaggggccacagccatcctctgt gcagccatcatacaagctgcactcaccaaaacacgttacaacatacacacctggctggcc agcgtgcagagagcaacaggtaaccctgtgtccctggtggacttggtgcctttgcttcag aaaactctgaaagatgaatcctccgtcacatgcaagatggcttgctctgcagtgaggcac tgcctcatgactgtgtgcagcagtaccctgagtgagctaggcctgcagttgatgataaac cttcttgctctgagggactcgtcctattggcttgttcgcacagagctcttggagaccttg gctgaaatggacttccggttagttaatttcctcgagaggaaaacagagactttgcacaga ggggatcatcactacactgggcggcttcggctgcaggacagagtgctgaatgatgtggtc atccgtctgttgggagatgatgaccccagagtccggcacgtggctgcctctgctgtcagc aggctggtttccaggttgttctatgactgtgaccagggtcaagtggacccagtagtggca attgcccgggaccagagttcagtctacctgcagctgctgatgcacgagacacaacccccc tcccagttcacagttagcaccatcacaaggacgtaccgaggctacaacttgtccaacaat gtgtctgatgtcacagtcgagaacaatttgtccagagtcgttaccgccgtctcccatgct ttcacctcctcttcctccaaagccctgacttttggctgctgtgaagccttgtgcctcctg gctatacattttccagtgtgcacttggagtacaggctggcactgtggctatgttagctcc agtagcagcttttcttcccgctctagtctcagccgcagcagaggcagagcccttagtttg cctagtagtgctccagcctcttccaccacctcttcatctgcaccagacaatgagcggagg actctgacagtaggaatggccaacatggtcctctctttactctcctccgcctggtttcca ctggatctttcttcacaccaggatgcactgatgctttctggcaatctgcttgctgctgtg gcccctaaatgcatgcgcaacccctgggccggagaggaggaaggcagcagtggtagcacc aaccctaacccaaataagatggacgagccatgggcaggtctgtcagagcgctccctggtg gccatggtggagcagctcttttctcacctactgaagatcctcaacatctgtgcccatgtg cttgatgacacaccaccgggaccagcggttaaggccaccctcccatccctgagcaacacc ccctccctcagtcccattcgcagaaaaggcaaggagaaggatgctgctgagcccagtgct gcgcctatgagcccaaagaaaagcaatgagatcaatacaggtaggccagcagacggcact gggtcaacggccataaacaaatccaccacctttggcaacttctaccatctgccaccctac ctcaagctctatgatgtcctcaaagctacacatgccaactacaaggtgacgctggacctc cacagcagccaagagaagtttggaggtttcctgcgtgccactctagatgttctgtctcag ctcctggagctggccacactacatgacatcagtaagtgtgtggaggaaatattgggctac ctcaagtcctgtttctccagagaaccaaccatggctactgtttgtgtacaacagctgttg aagaccctttttggtaccaacctggcctcccagtgcgaaggcatcttgagtggacccagc cgctcccagggtaaggctctccgtctcggctcctccaacctgcgaccaggcctctaccat tactgcttcatggcgccgtacactcacttcactcaggctcttgctgatgctagtcttcgt aacatggtgcaggctgaagaggagcaggacacctctggatggtttgatgtgacgcaaaaa gcttcgaaccagctgaggtacaatattgcaaatgcaacacgcaacagaggagacaagaat gccatccacaaccacattcggctttttgaaccactggtgatcaaagctttgaagcagtac actaccagcacctctgtggccctgcagaggcaagtactagacctgctcgcccaacttgtg cagcttagggtcaactactgcctgcttgactcggatcaggtgttcataggttttgtcctg aagcagtttgagtacattgaagtaggacagttcagagactcggaggccatcattcccaac atcttttttttcctggtgctgctgtcttatgagcgttaccactccaagcagataatcagc atccccaaaatcatccagctgtgtgacggcatcatggcgagtggcaggaaagctgtcaca cacgccatcccagccttgcagccaatagtccacgatctgtttgtgttgaggggctcaaac aaagcagatgcaggcaaagagctggacacacagaaagaagtggtggtctccatgctgctt agacttgtgcaataccatcaggtgttggagatgttcatccttgttctgcagcagtgtcat aaagagaatgaggacaagtggaagagattgtccagacagattgccgacgtcatacttcct ttgatttctaagcagcagatgcacctggactctccggaggcattaggggtgttgaatact ctgtttgagactgtagcgccctcctctctcagacctgtagacatgctgctcaagagtatg ttcaccaccccggtaaccatggcgtcggtagctacagtccagctgtgggtgtccggtatc atggcggtgctcagggtactcgtctctcagtccactgaggacattgtcctgtcacgggtc cacgaactctcgctcaccccgcatctcctctcctgccacacaatccgtcgcctgcatcag cagaacctctccccaagtgacccgcccactgctgacacgctcgtcaaccaggaacctatt ggtgaggcacaaaaggccccacctgaggaaacctttgccaggttccttctccagctggta ggagtgttgctggatgacatttcctccagacaggttaaagtggacattacagagcagcaa cacaccttctactgccagcagctgggcacactgctcatgtgtctcatacatgtcttcaaa agtggaatgtttcgcaggatcacagctgcagcgagccgtctcctaaagggtgagggtgga ggtggacaaaccggcacagaggccgctctgttttaccccttagaggggctgaacagcatg gtgcagtgcctgatcaccacccacccctctcttgtgctgctttggtgccaggtcctcctc atcatcgactacaccaattactcctggtgggctgaggtgcaccagacacccaggggacac agcctctcgagcacaaagctgctgagccctcactcctcaggggaaggagaggaggaaaag cccgagatgcggttagctatggtcaaccgagagatcgtacgcaggggagccctcatcctc ttctgtgactatgtgtgtcagaacctccatgactcggagcatctgacctggctgattgtc aaccacgtgcgtgacctcatcagtctttcccatgagcctccagtgcaggatttcatcagc gctgtgcaccgcaactcagctgccagtggcctcttcatccaggccatccagtcccgctgt gacaacctcagcactcctaccatgttgaagaagactctgcagtgtttggaaggcatccac ctgagtcagtcgggctccctgctgatactgtatgtggacaagctgctcagtacacccttc agggttctggctcgcatggtggacacactggcgtgtcgcagagtggagatgctgctggct gagacactacagaacagtatagctcaggtgcctgtggaggaactggacaggatccaggaa tacctccagaccagtggcctcgctcagaggcatcagaggttttactccctgctggacagg ttcagagccactgttgctggcaccagcagccccacagctcctgtgactacacaccccttg gatggggatccaccacctgcccctgagctggtctctgcagataaggagtggtacgtggct ctggtgaagtctcagtgttgtcttcgtggagatgtttccttgttggagacgacagaactc ctcactaaactaccgcccactgacctctttgacatcatgagctgcaaggagttcaaccta agtctactgtgtccatgtctcagtatggggatgcagcggttagcacgaggtcaggggtcg ctcttgttggagacagctctacaagtgacactagaacggcttgcaggggtcaccgggtca cttccggtcccccaccagtccttcctgccgcccgcccagtcacagccatactggaaccaa ctagctgctgtgtatgatgagccaggtttctacccccgggtgttgtcgctctgtagagct ctgtcccagtacctgctgaatgtgagccagctgccctcctcactacacatctcctctgac aaggaacacctcatcactactttcacctgcactgctgccgaggtcgtagcgtggcgtctc ctccaggacaagttgcctctgagtgtggacctgcagtgggctctgtcctgtctgtgtctg gccctgcagcagccctgcgtctggaacaagctctctaccccagagtacaccacacacacc tgctccctcgtctactgcctacacctcatcattgttgcggttgctgtgagtcctggtgac cagcttctgtatccagagaagaaaaagacgaagtcagagagagatgatggagatgaagtt gactctgcgcacgctgaccacatgtgcgagtggcaagcgtgtgagattatggcggagctg gtggaaggcctgcagagcatcctcgcactgggtcaccatagaaacaatgcgttcccccct ttcctcacaccaaccttgcgcaacattgtcattagtctgtcccgactgcctctggtcaac agctacacccgagtacctccactggtttggaaactgggctggtcccctcagccaggagga gagtacggcacaacactccctgagatccctgtggacttcttgcaggaaaaggatgtcttc agagagttcctctaccgcatcaacacactgggttggagcagcaggactcagtttgaggag acctgggcgacactgctcggggtgctggtcacccaacccatcactatggaccaggaggag gagactcagcaggaggaggacttggagcgtacccagttgaatgtgttagcggtgcaggcc atcaccagcctggtgctgagtgccatgaccctgcccactgctggcaaccctgcagtcagc tgtctggaacagcagcctcgcaacaagagcctgaaagcgctggaaacacggttcggaagg aaacttgcagtaatcaggggcgaggtggagagagagattcaggctcttgtgtctaagaga gacaatgttcatacacaccacccgtaccacgcctgggaccctgtgccctctctatcggca gcctcacctgcgggcacgctgatcagccatgagaagctgctgcttcagatcaacacagag agggaattgggcaacatggactacaaactgggacaggtctccattcactcagtgtggtta ggaaacaacatcaccccactgagagaagaggaatggggtgaggatgaagaagatgaagca gacactccagcacccacctccccgcctctatctcctatcaactctaggaagcatcgtgca ggtgtagacattcattcatgttctcagtttctcttggagctgtacagccagtggttgatc cctagctccccgagtaacaggaagaccccgaccatactcgtcagtgaagtggtccgatcg ctgctggcggtgtcggacctgttcacggagaggaaccagtttgacatgatgttctctacc ctgatggaactgcagaagctccacccaccagaggatgagattctcaatcaatacctggta cctgccatctgcaaggcagctgccgtactgggaatggacaaagcaatagcggagcctgtt tgtcgcttgttggagacgaccctgcgcagcacccacctgcccagccgaatgggagctctg catggattgctgtatgtgttggagtgcgacctgctggatgacacaacaaaacagcttttc cccaccgtctctgagtacctgctgtccaacctcagggctatcgctcactgtgtgaacctg cataaccagcagcatgtgttggtaatgtgtgctgtgtccttctacatgatggagaactac cctctggatgtaggagctgagtttatggctggaatcatacagttgtgtggtgtgatggtg tctgccagcgaggactccactccctccgtcatctatcattgtgtgctgcgcggtctggag cgcctcctgctgtcagagcagttgtcacgtgtggacggagaagcgctggtcaaactcagc gtggacagagtcaacatgccgtcgccacacagagccatggccgccctgggcctcatgctc acgtgcatgtacaccgcggtgcttgcgtcgggttcagacgtgacaggggttagaggtcag gttgactctgccgtagcagaggcggtgggcgtcacggcaggtcatgttggtttctcctca ggaaaagagaaagccagccccgccagtcgcccccactctgaccctcaggccccagacagc gagtcgatcattgttgccatggagagggtctctgtgctcttcgacaggatccggaaaggt ttccccagtgaggctcgggtggtgtccaggattctgccccagtttctggacgacttcttc ccaccacaggacgtcatgaacaaggtcatcggagagttcctgtccaatcagcaaccgtac ccacaatttatggccgctgtcgtctacaaggttttccagaccctccatgccacaggccag tcttctatggtgcgagactgggtgctactctccttgtccaacttcactcagaggacacca gtggccatggccatgtggagcctctcctgtttctttgtctctgcttccacctcccagtgg atctctgccctactgccacacgtgatcagccgaatgggctccagtgaggtggtggatgtc aacctgttctgcctggtggccatggatttctaccggcaccagattgatgaggagctggac cggagggctttccagtctgtctttgagaccgtggcctcgccaggcagcccctattaccag ctgctgggctgtctgcagtcaatccaccaggatacatcactctga

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