Cyclopterus lumpus (lumpfish): 117740088
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Entry
117740088 CDS
T09199
Symbol
trim23
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM23
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117740088 (trim23)
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
clum04031
]
117740088 (trim23)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117740088 (trim23)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117740088 (trim23)
GTP-binding proteins [BR:
clum04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
117740088 (trim23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
SRPRB
G-alpha
zf-RING_UBOX
zf-B_box
zf-RING_5
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117740088
NCBI-ProteinID:
XP_034402150
Ensembl:
ENSCLMG00005018578
LinkDB
All DBs
Position
12:complement(4248719..4254164)
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AA seq
580 aa
AA seq
DB search
MAAAAAGINKQGAVATMEPCLRHGRGAHGGSVKVLECGVCEDVFSLQGDKVPRLLLCGHT
VCHDCLTRLPLHGRAVRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGASNQSGMAE
DALKGMGECVIRCDEDESHTASMYCTVCATHLCAECSQLTHSTRTLAKHRRVPLADKPHE
KTLCPQHQVHAIEFVCLEEACQSGPLMCCVCKEYGKHQGHKHAVLENEANQIRASILDMA
HCIRTFTDEVSEYSRKLVGIVQQIEGGEQIVEDGIGMAHTEHVPGTAESARSCVRAYFAD
LHETLCRQEEMALSVVDAHVRERLIWLRQQQEDMTILLSQVSTACMHCEKTLQQDDCRVV
LAKQEINCLLETLQKQQHQFTELADHIQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLDG
AGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQA
VVFVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVSGVVSVEEMTELLSLHK
LCCGRSWHIQGCDARSGMGLHEGLDWLSRQLVAAGVLDVA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgccgcagcaggaataaacaagcagggagccgtagcgacgatggagccctgt
ctccgacacgggaggggagctcacgggggctcagtgaaggtgctggagtgtggcgtgtgc
gaggacgtcttctccctccagggggacaaggtcccccgtctgctgctctgtggacacacg
gtgtgccacgactgcctcacccggctgcccctccacggcagagctgtccgctgccccttc
gacaggcaggtcaccgagctgggggattctggagtttggggcctgaagaagaacttcgct
ctgctcgaactcctggagcgactccagaatggagcgagcaaccagtcgggcatggcggag
gacgccctgaaaggcatgggagaatgtgtaatccggtgtgacgaggacgagagccacacg
gcctccatgtactgcaccgtgtgcgccacccacctgtgcgccgagtgctcccagctcacc
cactccacccgcacgctggccaaacaccggcgggtgccgctggctgacaagccgcacgag
aagaccctgtgcccgcagcatcaggtccacgccatcgagttcgtctgcctggaggaggcc
tgtcagtcggggcccctcatgtgctgcgtgtgcaaggagtacggcaagcaccagggacat
aagcacgctgtcctcgagaacgaagccaatcagatccgcgcctccatcctggacatggcc
cactgcatccgcaccttcacagacgaagtgtccgagtactcgaggaagctggtgggcatc
gtgcagcagatagaaggcggcgagcagatcgtggaggacggcatcggcatggcgcacacc
gagcatgtccccggcacggcagagagcgcgcggtcttgcgtccgagcgtacttcgcggac
ctccacgagaccctgtgccggcaggaggagatggcgctgagcgtggtggacgctcacgtc
agggagaggctgatctggctgaggcagcagcaggaggacatgaccatcctgctgtctcag
gtctccaccgcatgcatgcactgcgagaaaacgcttcaacaggacgactgcagagttgtg
ctggcaaagcaggagatcaactgtctgctggagacgcttcagaagcagcagcaccagttc
acagagctggcggatcacattcagctggacgccggcatccccgtcaccttcactaaagac
aaccgggtccacatcggtccgaagatggagatccgggtcgtgactcttgggctggatgga
gcgggtaaaaccaccatcctcttcaagctgaaacaagatgagttcatgcagcccatccca
accatcggtttcaatgtggagacagttgaatataagaatttgaaattcaccatctgggac
gtgggtggaaaacataagctccgccccctctggaaacactattatctgaacacccaagcg
gtggtgtttgtgattgacagctgccaccgggacagactcatggaggctcacagcgagctg
gccaaactactgacggagaaggagctgagagacgccttgttgctcatctttgcaaacaaa
caggatgtttccggcgtcgtgtccgtggaggagatgacggagctgctgagcctccacaag
ctgtgctgtgggaggagctggcacattcagggctgcgacgcccgcagcgggatgggcctc
cacgaggggctggactggctctccaggcagctggtggccgccggcgtcctggacgtcgcc
taa
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