Cyclopterus lumpus (lumpfish): 117740117
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Entry
117740117 CDS
T09199
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117740117 (chd1)
03036 Chromosome and associated proteins [BR:
clum03036
]
117740117 (chd1)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117740117 (chd1)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117740117 (chd1)
SLIK complex
117740117 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
117740117
NCBI-ProteinID:
XP_034402194
Ensembl:
ENSCLMG00005021912
UniProt:
A0A8C3GBG2
LinkDB
All DBs
Position
12:complement(19130273..19152969)
Genome browser
AA seq
1793 aa
AA seq
DB search
MAGRVEDESVSNSSGESSNSDDESGSGSGSASGSASGSSSSSSSSSSQSGSSDSGSGSDS
GSPSDSDTEKSKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQKRQSS
SNSGSDEDSSSSDGSDSSSGSKRRRNSASSDSGSGSGSGSGSGSDSSAEANSDETASDYE
PSHKIKSRKPPTKMNYRNGKKSSKQKKKSQKCSSSEDEDDNYKKTSAGQRRQATVNVSYK
EDEELKTDSDDLVEVLGEDVPQPEEDEFETLERVMDSRIGRKRATGSVTTVYAVEADGDP
NTNFNNNKEPGEIQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKDQEKKRWL
KAASPEDIEYVNCQEEMMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSW
EDGALIGRKFQKCIDNYMSRNQSKFIPSRDCKVLKQRPRFMPMKKQPSYIGGDGLELRDY
QLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNCLFNDHQLYGPFLLVVPLSTLTS
WQREIQLWAPNMNFVVYLGDISSRNMIRTHEWIHGHSKRLKFNILLTTYEILLKDKSFLG
NVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK
FHSWELFEEAHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQ
YYKWILTRNYKALSKGKGSTSGFLNIMMELKKCCNHCYLIKHPEDIEFLNRAEALQQLIR
SSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQ
ALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKR
QVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNKEEL
SSILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEQLLSQFKVANFS
MMDEEEIDIDSERSHRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQTSFNAS
SGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPL
ERLDAIARDAELVDKSEQDLKRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGPTFRI
SGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIDWGKEDDSSLLIG
IYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKREAQK
QAGTANSRKRKPRSKKSKTLKPTKTDEVLKSTSSDPPSDKRSDDEDEIEEEKEVVPVKAP
CRRSRADRVVAVKEDDDDEDEELEQEDVSSSGEREVIDKDIKKDGKKEKREDSWDIKETK
EPKEKKETKPLEAVHKQEESIEKIEVKTEVRERTKKASDVPVHITAGGENVPISEESEEL
DQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPD
QIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSINTHGYKHADIE
RLKDNSHQDDSSRDSYSSDRHPPSGRYHESSSSSKERHSSDSHRKTSAGESRKRPYSFSN
GKDHRDHYRPDSRDRDRQDRYHNDSKHRKLEEFRSSRDHRLDVKDHSHSEHRSSYRYHSD
WQAEQRASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgagttgaggatgaaagtgtaagcaacagcagtggagaatcaagtaattct
gacgatgaatccggttctggatcgggctcagcgtcgggctccgcctcgggctccagttcc
agctcctccagcagcagcagccaatcagggagcagtgactcaggaagtggctcagactct
ggcagcccgtcagattctgacacagagaaatcgaaggagaagatggaaccgccaaataag
tcaaacattgatggagctgagttctggaagtccaacccaagtatcctagcagtgcagaga
tcggctatgctcagaaaacagcaacttcagcagcagcagcagcagaagagacaaagctcc
tcaaatagtggctctgatgaggactcgtcaagtagcgatggatctgactcatcaagtgga
tccaaacgaagaagaaattctgcctcctctgactctggatcgggttctggatctgggagt
ggttctggatcagactcatcagcggaggccaacagtgacgaaacggcatcggactatgag
cctagtcacaaaatcaaaagcagaaagcctccaacaaagatgaattatcggaatgggaag
aaaagcagcaaacagaagaagaaatcccagaagtgttcttcctctgaggatgaggatgac
aactacaagaagacgtctgcggggcaacggcggcaggccacagtcaacgtcagctacaag
gaggacgaggagctgaagaccgattcagacgacctggtggaagttctaggtgaagatgtt
ccgcaaccggaggaagatgagttcgaaacactggagagagtgatggacagcaggatagga
aggaaaagagcaacaggaagtgtaaccactgtatacgctgtagaagcagacggggacccc
aataccaacttcaataacaacaaagagcctggtgagatccagtatttgataaagtggaag
aactgggcccatatccacaacacttgggagacagaggagacactcaagttacagaacgtc
aagggcatgaagaaactggacaacttcaagaagaaggaccaggagaaaaagagatggtta
aaggcggcttcaccagaggatatcgagtacgtcaattgtcaggaagaaatgatggatgac
cttcactctcagtaccagcttgtagagcgaatcataggacattcaaaccagaagtcagcg
gctggttacccagactacctgtgcaagtggcagggtttaccatactccgagtgtagctgg
gaagatggagctctgatcggcagaaagttccagaaatgcatcgacaactacatgagcaga
aaccagtccaagttcattccatcaagggactgcaaggtgctcaaacagagacccaggttt
atgcctatgaagaagcagccaagttacataggaggtgatggactggagctccgagactac
cagttggacagtttgaactggatggcccactcctggtgcaaaggcaacagttgcatcctt
gctgatgagatggggttaggcaagaccatccagacaatctctttcctcaactgcctgttc
aatgatcatcaactgtacggacccttcttgctggttgtgcctctctctacacttacctcc
tggcagagagaaatccaactctgggcccccaacatgaattttgtggtctatctgggagac
atcagcagcaggaatatgatcaggacacatgagtggatccatggccatagcaagagactg
aaattcaacatccttctcacaacatatgagattcttctcaaagacaagtcatttttgggc
aatgtcaactgggccttcattggtgtggatgaggcgcaccgactaaagaatgatgactcc
ctcctctacaagaccatgatggacttcaaatccaatcacaggcttctgatcacaggaacg
ccactgcagaactccctgaaggagctctggtccctgctgcacttcattatgcccgagaag
tttcactcttgggagctgttcgaggaggcgcatggtaaaggcagggactcgggctacaca
agtctgcacaaagagctggagccttttttactgcgccgagtcaagaaggatgtggagaaa
tctcttcctgccaaagtggaacagatcctcagagtggagatgagtgctatccagaaacag
tattacaaatggatcctgaccaggaactataaggctctgagtaagggcaaaggcagcacg
tcaggcttcctgaacatcatgatggagctgaagaagtgttgtaaccactgttaccttatc
aagcacccagaggatatcgagttcctcaacagagctgaagccttacagcaactgatccgc
agcagtgggaaactggtcctgttggacaaactgctggtgcgcttgaaggagcgaggccac
cgagtcctcatcttctcccagatggtacgaatgctggatatcctggctgattatctgagg
agccggcagttcctctttcagagattagatggctccatcaagggggagatgaggaagcag
gcgttggatcattttaatgcagagggctcagaggatttttgcttcttgttatcaacgcgt
gctggaggtcttggtatcaatctggcatcagctgacacagtagtgatttttgactccgac
tggaacccccagaatgatctgcaggcacaggccagagcccacaggatcggacagaaaaga
caggtgaatatctaccgtctggtgacgaagagctcagtggaggaggaaatcattgagagg
gcgaagaagaaaatggtgctggatcaccttgttatccagaggatggacaccacagggaaa
actgtcctccataccggtgctgctccctccagctcagcaccattcaacaaagaggagctg
tcttccatcctgaagtttggtgctgaggagcttttcaaagagccagagggcgaggagcag
gagcctcaggaaatggacatcgacgagatcctcaaaagagctgagaccagggaaaatgat
cctggaccctccacagtgggagaacaactgctgtctcagttcaaggtggccaacttctcc
atgatggacgaggaggaaatagacatagactctgagcgtagtcatcggagttgggacgac
atcattcctgaggaacagaggaggaggatggaggaagaggagagacagaaggagctagag
gaaatctacttgctgccacgcatgaggaattgtgccaaacagacgagctttaacgccagt
tcgggccggcagagcaggaacaggaggtactctgggtctgacagcgactccccctcagac
cgaaaaaggccaaagaaacgagggcggcctcggaccattccacgagaaaatatcaagggc
ttcagcgatgctgagattcggaggtttgtcaagagctacaaaaaatttggaggaccactg
gaaaggttggatgctattgctcgtgatgccgaacttgtggataagtctgaacaggatctg
aaacgcctggcagagacggttcacaatggctgtgtgagaacactacgcgaaaacccatgt
ggaccagagaagacgtcaggaggcagaagagggaaggtgaagggcccaacgttcaggatc
tctggagtccaagtgaatgctaagcttgtcatctcccatgaggaagagttggcgccactc
cacaaggccattcctgcggaccccgaggagagaaagaagtatatgattccatgccattca
aaggcagcacactttgacattgattgggggaaggaggacgactccagcctccttatagga
atctatgagtatggttacggcagctgggagatgatcaagatggatccagacctcaatctc
acacacaagctcctaccagacgaccctgacaagaagccacaggccaaacagctccagaca
agagcagactacctcatcaagttgctaagcaaggacctggccaaaagagaagcccagaaa
caagcagggacagccaattcacggaaaaggaaaccacggagtaaaaagagcaaaactctg
aagccaactaagaccgacgaagtgctaaagagcacttcgtcagatcccccgtcggacaag
aggtcagatgatgaggatgaaatcgaggaggaaaaggaggtggtaccagtgaaggcgccg
tgcagacggagccgagcagacagggtggtggcggtaaaggaggacgacgacgacgaagat
gaggagcttgaacaggaggacgtttcttcatcaggggagagggaggtcatagataaagat
atcaaaaaagatggcaaaaaggagaagagggaggacagttgggacattaaagagacaaag
gagccaaaagagaaaaaagaaacaaagcctctggaagcggtacataaacaggaggagagc
atagaaaagattgaagtaaagactgaggtacgagaacgaaccaagaaagcctccgatgtg
ccggtccatattacagcaggtggggagaatgtgccaatatcggaggagtctgaggaactg
gaccagaggaccttcagtgtgtgtaaagagaggatgcggccggtgaaagcggccctgaag
cagctggacagaccggagaaagggctgtcggagcgcgagcagctggaacacacgagacag
tgcctcatcaagatcggggaccacatcacagagtgtctgaaggagtattccaatcctgac
cagatcaaacagtggagaaaaaacctgtggatatttgtttccaaattcacggagtttgac
gccaggaagctacataaactgtataagcatgcaatcaagaagagacaggagaacgcccag
gcaatggagcagaacactagaagtataaacacccacggctataagcatgcagacatcgaa
aggctgaaggacaactctcaccaggacgacagcagcagggacagctacagctcagacagg
catccgccttcgggtcgataccacgagagcagcagcagcagtaaagagagacacagctca
gactcccacaggaagacctccgccggggagtccaggaaaagaccgtactcctttagcaac
ggcaaagaccacagagaccactacagaccagacagcagggacagagacagacaggacaga
taccacaacgacagtaagcacaggaagctggaggagttccgctccagcagagaccaccgg
ctggacgttaaggatcattcccattcagagcaccgctcttcctaccgctaccactccgac
tggcaggccgagcagcgagcctcggccagcgggccccgctccccccgggaccagcgatcg
ccctacgactcccgctcgcccatgggacaccgctcgcctttcgactactcgtcggaccac
aagagcacaccggagcagatctggagcagccgcaagacataa
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integrated database retrieval system
