Cyclopterus lumpus (lumpfish): 117740220
Help
Entry
117740220 CDS
T09199
Symbol
nup214
Name
(RefSeq) nuclear pore complex protein Nup214 isoform X1
KO
K14317
nuclear pore complex protein Nup214
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117740220 (nup214)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117740220 (nup214)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117740220 (nup214)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_NUP159_NUP214
Nup214_FG
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
117740220
NCBI-ProteinID:
XP_034402353
Ensembl:
ENSCLMG00005010905
LinkDB
All DBs
Position
12:complement(7720251..7751306)
Genome browser
AA seq
2006 aa
AA seq
DB search
MSDDTDSPPEREMKDFQFRQMKKTRVFDPAEDLPRERSSLLTISNKFGLTFVGLDRTFKV
YQTQDILSADTFDGKANEIVEGIAALAEVTVDLALHHLALSSDELTLSVCGMSEGAGLFL
TFYDVRIFVNKSRPQKLPFASLLPAVPPGTVVQDLKWNPGHASVLAVCLSDGRMMILDVT
DSVKVYAELPASSGITCICWSPKGKQVAAGKMNSSVSQYTPALEEKKIIPCPHFYTSDQP
VKVLDVLWLRTFVFAVVYAAADGSLETPPELVLISLPKKDERVETKYLNFSDTVYGSCTE
RQHHYFLNHVEDWDLVFAASAASIEVSVIAARQEDKIWELWILEDASRAELPVTETNEDT
LPLGLAIDYTSQHEIHITEEKTLPPAPTMLMLSTEGILCPFALLNLNPGVKQLISAPTVL
SLEGERLPKPGSLAPQPPKLAATFPSALATFPNLGFTSAVASTPLAPAASSSAAPFSMVP
TAPATSMASSSGFSFSVPTTCATSAPPPFSMAVPTPFGSGSLGFSFASKPPPSDTPSAFS
FTPSIKPSAVAAPVPAPTPQSVATASPSTVKLNLNERFSALETPAPSPQSFSFNSSLSKT
VAPSGLTAPPLSATKPPAVLAPVRPVQTSTPATVVQKPAHAAQGRVQTPQQAAVGVKTME
KQFQQKKDSDPIMAGILEEIAHFQKELDDLKARSARADFKVGTIEEMKALRKESEDLHIF
TLEIKETTESLHGDIGTLKTTLLEGFAGAEEAKAQSELSRDKNYRQLLYKKSLDPRSEDQ
LKEIRRLYQYVTFAVEDVNDVLDVEWEKHLEKKKKQKHMAVPGREGLFTTLANNLYIINQ
QKNKLDQLIKQLTSLRLYNKTTPPTINHSTATETSAGLESELESLRVALLKARLDTTPLK
TKSKSPAVKISPVKQSQLRNFLSKGQMPPVRSTAPANLSRSAFLSPKYYEDLDDVSSTSS
LSQSLEPRPADLEEEEEEELLPEPIPLMAIPPALSNPRHSTVVRTPSIHPGFGAIQSTPK
IHSVQGMGFGLSPIASPVPTNKINLCGAESTALATKTVKHGAPPNERAIPVTIPAQQAAA
TAALRRQMANQKTAVVGTSMTESNLKTVPQVVNVQELKDKGPPMPVSNMSSSIPDPAAPV
FATVSSNQAKRIADSFTCEDRPLTTWNPTQGFQKMSTESTTNPQTGFVFGQSPKTDASVA
PAFSADQSTSKGFSFASGSGGFSFASVTQGVGMSQVKDVNKFSFGGTSKIMFTQTGEESF
ALTPISTSPALGTGSPTQPSNSSSDKLASSTSAPRIEPQPLKTIGGETLGSFSGLRVGHG
EEAKDSDTKPASGSFSFGETALNGGKGVAQFSFASGLQKSAEDSPAADLSKGAVSGSLFK
PPEPSPKQAFSVPQSSSIASASPTSFGSLLAASPDSSEEPKVSPQPSEPPPPLENKPATG
PVVESASPLVVSEPAARITAVTVPAPTPVPLLTTTAPTANFSPSVNAPTEATTPAPASAA
PTIEATPDGTTSIAPVPTPAVATPAVAPVSQVAPIAFQVPSFDKPGSIFTQPAPATTDSS
SLGIIPVVSTVAATATTPTTEVYGTATTAGGTVFGQLVASPAPAPPSDPASTGFGSTAFG
ASTGTGFGKSVFGQVSGFGQPASNTEPSSGFSFGQSAFGAGSNSANTVGGAFGAATATNA
SSFSFGTSSANTASSTGTGLFGQTTAPAFGQSSGFGQGSVFGSNTTTSSSTGFSFGQPSG
ESFGSSAPLPPPAFGQQAGTGSVFGQQQQPSSGGTLFGLNPANPAGSPAGGGFFTGLGGK
PSEEAANKNPFGTNAPTGGFGQPAQTGTNSLFGSTGAKGFGFGQPSFAEQKASGTFTTGA
GSVAAQGFGSFASPTKAGAFGSAPVFGNAPSFGSSQAFGAGAAFGSSPSFPNNMVPSAGK
VFGEGTTASSMGGFGFASPPSGPSFGALANQSAPSFGGLAQQGPGFVNQPSSFSGFAQQP
QAGGFSGNAFGSTNQSSPQTFASWRS
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgacacggactccccccccgagagggaaatgaaggattttcagtttcgtcag
atgaagaaaacaagagtctttgaccctgctgaagatttgccaagagaaagaagtagtctg
ctcaccatctcaaacaaatttggtttaacttttgtcgggctcgacagaacattcaaagtt
taccaaactcaagacattctgtctgcggatacattcgacggcaaagccaacgaaatagtg
gaggggatcgcagcattggcggaggtgactgtggatctggcactgcaccacttggctctc
agtagtgatgaacttaccttgtcagtatgtggcatgtccgagggggcgggtttgttcctc
acgttctatgatgtccgcatcttcgtgaacaagtcaagaccacagaagctaccttttgca
tcattgctgccagcagtaccccctggcactgtagtgcaagacctgaagtggaatcctggt
catgcatccgttttggcggtctgtctgtctgacggccggatgatgattttggatgttact
gacagtgtcaaagtttacgctgagctaccagcttcaagtggcatcacatgtatatgctgg
agtccaaaaggaaaacaagtcgctgcaggaaaaatgaattcctcagtcagtcagtataca
ccagcactggaagagaaaaagattattccgtgtccacacttctacacctctgaccaacct
gtgaaagttctggatgtgctgtggctgagaacctttgtgtttgcagtggtatatgctgct
gcagatgggtcccttgagacccctcctgagctagtgttgatctcccttcctaagaaggat
gagagggtggagacaaagtatctgaactttagtgacacggtatatggcagctgcactgag
cgacaacaccactactttctgaaccacgtagaagactgggaccttgtgtttgctgcatca
gcggcttccattgaagtcagtgtaatagccgccagacaagaggacaagatctgggagctc
tggatcctggaagatgcgagtagggctgagcttccagtgactgagacaaatgaagacact
ctgccccttggcttagccatagactacaccagccagcatgagatccacatcactgaggag
aagaccttgcctccagcacccacgatgctgatgctttccacagagggaatactctgcccc
tttgctctgctcaacctcaatccgggggttaagcaactgatctcagctcccactgtactc
tccttggagggggagagactgcccaagccaggttctttggcaccccaaccacccaaactt
gctgccaccttcccatctgccctagcaacattcccaaacctcggttttacttcggcagtg
gcttccacccctctagcccctgctgcatcttcctctgctgccccattcagcatggttccc
acagctcctgcgacgtccatggcatcatcatcgggcttcagtttctcggtcccaactaca
tgcgccacctctgctcctccaccgttctccatggcggtgcccacaccttttggctcaggg
tcccttggcttttcctttgcctccaaacctcctccctctgacactccttcagcgttttct
tttaccccttcgatcaaaccatctgcggtggcagccccagttccagctccaacaccccag
agcgttgccactgcctccccatcaacagtaaaacttaatctaaatgagaggttttcagca
ctggagaccccagcaccatccccacagtctttctccttcaattcctcgctgtccaaaaca
gttgctcctagtggtttgacggcccctccactctcagccactaagccacctgctgtattg
gccccagtgcgtccagttcaaaccagcacaccagccacagtcgtccagaaacctgctcat
gctgcccagggtcgtgtccaaactccacagcaggcagctgttggtgtgaagaccatggag
aagcagttccagcaaaagaaagactctgatcccattatggctggtatactggaagagatt
gcacattttcagaaggagttggatgatcttaaagcacgaagcgcgagagctgacttcaag
gttggcaccattgaagagatgaaggcattaaggaaggagtcggaggacctccatattttc
actctggagatcaaggaaacaacagagtctctccatggggacattgggacactgaagacc
accttactggagggctttgctggggcagaagaagccaaggcccagagtgagctgagcaga
gacaaaaattacagacagctgctgtacaaaaaatctctggacccccgcagcgaggatcag
ctcaaggagattcgcaggctctatcagtatgttacgtttgctgtggaagatgtcaatgac
gtgttggatgtggaatgggagaaacaccttgagaagaagaaaaagcagaaacacatggcc
gtgccgggacgtgagggtctgttcaccacactggccaacaacctgtacattatcaaccaa
cagaagaacaaattggaccagttgattaagcaactcacttcactgcgcctctacaacaag
actacccctccaacgataaaccacagcactgctactgaaacatctgctggtttggaaagc
gagcttgagagtttaagggtcgcactcctgaaagccaggctggacaccaccccgcttaaa
accaaatcaaagtctccagccgtcaagatctcaccagtgaaacagtcccagctgcgtaac
ttcctctcaaagggacagatgcctcctgtccgctcaactgcaccagccaacctgtctcgc
tcggccttcctctcacctaaatactacgaggacttggatgatgtgagctctacgtcctcc
ctgtcccagtccctggagcctcgcccagctgacttggaggaggaagaggaggaggaactt
ctgccagaacccattccccttatggccatccctccagcattatccaacccccgccactcc
acagttgtgaggaccccctctatccatcctggcttcggggccatccagtcaaccccaaaa
attcactcggtacagggtatgggctttggactcagccctattgccagccctgttccaacc
aataagatcaacctctgcggggctgaaagcactgctcttgccacaaaaacagtaaaacat
ggagccccaccaaatgagagggccatccctgtcaccatcccagcccagcaggctgcagcc
accgctgctctacgaaggcagatggccaatcagaagacggctgtggtcggtacttccatg
acggagtccaatttgaagacggttcctcaggtggtcaatgtccaggagcttaaggacaaa
gggcctccaatgccggtttccaatatgagctcatcaataccagatccagcagccccggtc
tttgcaactgtttcttccaaccaggccaaacgaattgctgacagttttacatgcgaagac
agaccactaactacatggaatcctacccaaggtttccagaagatgtccacagaaagcaca
accaacccacaaacgggcttcgtgtttggtcaatcgcccaaaacggatgcatcagtggct
cctgctttctccgcagaccaaagcaccagcaaaggtttctcctttgcatcagggtctgga
ggcttcagttttgcttctgttactcagggagttggaatgtcacaagtgaaagatgtgaat
aaattctccttcggtggaactagcaagattatgtttacccagactggagaagagtctttc
gccctcaccccaatatccacctcccctgctcttggcacagggtctcccactcagccttca
aactcatcaagtgataaacttgcctcttccacatcggcccccaggatagagccacagccg
cttaagacaattggaggagagactctgggcagtttctctggactacgtgtgggccacgga
gaagaggctaaagattcagacaccaaacctgcttctggctcatttagttttggggaaact
gcacttaatggaggcaagggagtagcacagtttagctttgcttcaggtctccaaaagtct
gcagaagattctccagcagcagacttgtccaagggggcagtgtccggcagtttgttcaag
cctcctgaaccgagccccaagcaggccttctctgttccgcagtccagttctattgcctca
gcttcgcctacgtccttcggtagtctccttgcagcttctccagactcctcagaggaacca
aaagtttccccacaaccttcagaacccccaccaccccttgaaaacaaacctgctactgga
ccagttgtagagagcgccagtccccttgtagtatctgagcctgcagcacgaatcacagca
gtcacagttccagcaccaacacctgtacctcttttgaccacaacagcccctaccgcaaac
ttttccccctccgtcaatgcaccaactgaagcaaccactccagcaccagccagtgcagct
cccacaatagaagccaccccagacggcaccacctccattgctcctgtgcccactcccgct
gtggccacccctgctgtagcacctgtctcccaggtagctccaatagcgttccaggtgccc
agttttgacaaaccaggttccatttttactcaacctgctcctgcaacaacagacagcagt
tcccttggcattataccagtcgtcagcacagttgccgctacagccaccactcccaccact
gaggtttacggtacagcaactacagctggaggcactgtgtttggacaacttgttgcttct
ccagccccagcacccccctcagatccggcatccacaggttttggctcaactgcctttggt
gcatcgactggaactggttttggcaaatctgtgtttggccaggtgagtggctttggtcag
cctgccagcaacaccgaaccatccagtggcttttcttttggccaatcagcctttggagct
ggttccaacagtgcgaatactgtaggaggtgcttttggtgctgctactgctaccaatgcc
agttccttctcctttggcacaagcagtgccaacacagccagcagcactggcacaggactg
tttggtcaaaccacagcaccagcatttggccagagctcaggatttgggcaagggtctgtg
ttcgggagtaacaccaccacgtcctcatctacaggattcagctttggacagccgtccggt
gagtcatttggctcttccgctcctcttccgccacctgcgtttggccaacaagccggcact
ggaagtgtatttggacagcagcagcagccatcatctggtgggactctgtttggcttaaat
ccagccaatccagcgggctctcctgccggcggagggttcttcaccggccttggaggaaaa
ccgagcgaagaagctgccaacaagaacccattcggcaccaatgcccccaccggagggttt
gggcagcctgctcagacaggtaccaacagtctgtttgggagtaccggtgccaagggattt
ggctttggacagccctcctttgctgagcagaaagctagtgggaccttcaccactggtgca
gggagtgtcgcagcccagggatttggctccttcgctagtccgacaaaagcaggtgctttt
ggcagcgctccggtgtttgggaatgctccttcctttggtagttcccaggcatttggtgct
ggagcagcatttggctcgagcccttccttccccaacaacatggttccctcagctggtaaa
gtgtttggagagggaacgacggcttccagtatgggaggatttgggtttgcgtcaccgccc
agcggcccgtccttcggtgctctagccaatcagagcgctccatcgttcgggggcctggcc
caacaaggccctgggtttgtaaatcaacccagcagcttctcaggctttgcacaacagccc
caggcgggaggattctctggaaacgcctttggatctacaaaccaatcaagtccacaaaca
tttgccagttggagaagctag
DBGET
integrated database retrieval system
