Cyclopterus lumpus (lumpfish): 117740228
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Entry
117740228 CDS
T09199
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117740228
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117740228
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117740228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_N
Ank_2
AAA_19
Ank
ATPase
Ank_4
Ank_5
nSTAND3
AAA_23
AAA_22
Ank_3
AAA_30
SRP54
PhoH
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
117740228
NCBI-ProteinID:
XP_034402370
Ensembl:
ENSCLMG00005021223
LinkDB
All DBs
Position
12:18785163..18818358
Genome browser
AA seq
1400 aa
AA seq
DB search
MSSAGPASQKPAKSQNTRHHGSFSKGLKEIHVDEEVKISMNLSLERFHYSDQKEMEFPSS
LSSTERAFIHRMAQSLGYISKSKGKGPTRFLTIKKKNGSDKPRPNMPLAVSHNSLYFIRS
LLQRFPISNKERIDMQPINKSAMSVAAEPDSSCERSRASGRINNGIPMVPRRRNPSELDG
FRSSLPVHERQDEIIQLIGENRVVLVVGETGSGKTTQIPQFLLDECSRNGDPCRIFCTQP
RRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGDASLT
TVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDIDLFLKYFGSCPVIHL
IGRQFEVKEFFLEDILTLTDFNNKDMRKYKEETQRKEKKQKCLTEWCKAVEEEKQRTPVP
APGFLQDNSSLDRGDSAFNTLTENDTEQLEPWLLKEMDSCISNIFLNEDQDVFIQLFNLI
LYESVNVDYRHSDTGASPLMVAAARGFLTQVEQLLSMGADINMKASNGWTALDFAKHFQQ
TDAMDLLKSSIPLGEVNSLDESTLMQCESAEMSAEEQELLKLYHHSFDDEQVDLDLIMDL
LHNICSTTSDGAVLIFLPGYDVIVSLRDRILYDDKRFSSHSERYQVFTLHSDMQTLDQKK
AMKNSPPGIRKIILSTNIAETSITINDVIFVIDSGKVKEKSFDTLSHVSMLKTVWISKAS
ALQRKGRAGRCRPGICFRLFSRLRFKNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVAD
FLSKAPQPPAAHAIKNAVQMLKTIDAMDQYEDLTDLGYHLADLPVEPHLGKMVLCAVVLK
CLDPILTIACTLAYRDPFILPAQASQKRAALHNRKCFTSTSFSDHMALLRAFQAWQKARS
EGWERSFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAVVK
AALVAGMYPNLVHINQETSLFSSNREKKVHFHPTSILSQSQFKENSTAKSAQALPTDWLI
YDEMSRGHRMASVRCCSMMTSITVAIFGGCAKLPSSALQEPAAQKATDSPGDISDSETED
LAEMRIDDWLIFHLDKEAAGLVFELRQKWQNLFIKRIRCPSKPWSQQDEAIIRTLVSVLV
AEEQGAGLQQPTGIGQRPRPMSSEDGPQASMKSSKNSPQLPTNTNNDKSRRMPATWSLLQ
GKSQHREEASLPIKQLSDEPHSSSSSSCSVTLDSPSYSPCSSSSGKQIAKPPSPQLVFSS
VRYFIMKSSNVRNIDISQQKGIWSTTPSNETKLAKAFLEKSAIILIFSVQGSGHFQGYAR
MTSVISQESCQDWGFMGLGGVFSVEWIHKESLHFQCSQHILNPWNENKKVQISRDGQELE
PQAGSQLLLLWERNSGNQVQ
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgctggtccagcatcacagaaaccagccaagagccaaaacacacggcatcat
ggttctttctccaaaggcctcaaagaaattcacgttgatgaagaagtcaagatatcaatg
aacctctctttggagaggtttcactacagtgaccaaaaagagatggaatttccctcctcg
ttgtccagtactgagagggctttcattcatcgaatggcacagtccctgggttacatttct
aagagcaaagggaaaggaccaactcgcttcctcaccatcaagaagaagaatggttcagac
aaaccccggcctaatatgccacttgcagtctcccacaattccttatatttcatccgcagc
ctacttcagaggtttcccatcagcaataaggaacgcatagacatgcagcccatcaacaaa
agcgccatgtctgttgctgcagaacctgacagcagttgtgagaggagcagggcaagcggg
cgaataaacaacggcatacccatggtgcctcgaagaaggaatccatcagaactggacggt
tttcgaagctccctgcctgtgcatgaacgccaggacgagatcatccagctcatcggagaa
aacagggttgtgttggtggttggagagaccggctctggaaaaactacacagatcccacag
ttcctgctggatgagtgcagcaggaatggagatccctgcaggatcttctgcactcagccc
agacgcctggctgccattgctgtggctgagagagtggcagcggagagaggagagagtgtg
ggccagactgtcggttatcacatcagactagagagcagggtctcgcctaagacgctgctg
accttttgcaccagtggagtgctgctcagaacattgatggctggagatgccagtctgaca
actgtcacacatgtcattgtggatgaggtgcatgagcgtgatggtctgactgacttcctg
ctcaccaagatgcgggacgtgctgcagaagattcccacactgaaactgatcctgtccagt
gcagctctggatatcgatctgttccttaagtactttggctcctgccccgttatccacctc
ataggaagacaattcgaagtgaaggaattctttctggaagacattctgacgctgacagac
tttaacaataaggacatgaggaaatacaaagaagagacccagagaaaggaaaagaagcag
aaatgtttgacagagtggtgtaaggcagtagaggaggagaaacagaggacccctgtgcct
gccccgggcttcctccaggacaacagctccctggacagaggggacagcgccttcaacacg
ctgactgagaatgacacggaacagctggagccgtggctgctgaaggaaatggactcatgc
atttccaacattttcctcaatgaagaccaggatgtgttcatccaactcttcaacctcatc
ctctatgaaagtgtgaacgttgactacaggcacagtgacacaggggcctcgcctctgatg
gtggcagcagctcgagggttcctcacacaggttgagcagctgctcagcatgggggcagac
atcaacatgaaggcatccaatggctggacagccttagactttgccaaacacttccagcag
acagatgctatggatctactcaaatcttccattcctctgggagaggtgaacagcctggat
gagtccactctgatgcagtgtgagagtgcagagatgagcgctgaagagcaggagctgctc
aaactgtaccaccacagctttgatgatgagcaggtggacctggacctcatcatggatctg
ctgcacaacatctgctccaccaccagtgacggtgctgtcctgatttttcttcctggatat
gatgtgattgtgtcactcagggaccgcatcctgtatgacgataagagattctccagccac
tctgaaaggtaccaggtgttcactctacactcagacatgcagactctggatcagaaaaaa
gccatgaagaactctccacctggtatcaggaaaataattctttctactaacattgctgag
acaagtatcactatcaacgacgtgatcttcgtcattgattcaggaaaggtcaaagagaag
tcctttgataccctcagtcatgtatccatgttaaagacagtttggatctcgaaagccagc
gctttgcaacggaagggaagagccggccgctgcagaccagggatttgcttccgcctcttc
agtcgactcaggttcaaaaacatgctggaattccaggttccacagctgctgcgtatgcca
ctgcaggaactgtgtctgcagaccaagctgctggccccctcctcctgtccagtagctgac
ttcttgtccaaagctccacagcctcctgctgcacatgccatcaagaatgctgtgcagatg
ctaaagacaatagatgctatggaccagtatgaagacctgactgatctgggctaccacctg
gctgatctccccgtggagccccacttgggcaagatggtgctgtgcgctgtggtgctcaag
tgtctggaccccattctaaccattgcctgtacactggcctatcgtgaccccttcatcctt
cccgcccaggcatctcagaaaagggctgcactacacaaccgcaaatgtttcacttccacc
tccttcagcgaccacatggccctgctgagagccttccaggcatggcagaaggcccgcagt
gaaggctgggagagatccttctgtgagaagaacttcctgtcccaggccaccatggacatg
atacttggcatgaggacacagctgctggggcagctcagagccattggtttcgtacgagcc
cgtgggggcagtgacatccgggatgtgaatctgaactctgagaactgggccgtggtgaag
gcagccctggtggctggcatgtatccaaacctggtccatatcaaccaggagacctccctg
ttctccagtaaccgggagaagaaggtccactttcatcccacatctatcctgagccagtcc
cagttcaaggagaacagcacagctaaatcggcccaggcccttcccacagactggttgatc
tacgacgagatgagccgaggccacaggatggccagtgtccgctgttgctccatgatgacc
tcaatcactgtggccatatttggaggatgtgccaagctacccagctctgcgctgcaggaa
cctgcggcacagaaagctactgacagtccgggtgacatcagtgacagtgagacggaggac
ctagctgagatgaggatagatgactggctcatctttcatctggacaaagaggctgcagga
ctggtgtttgaactgaggcagaagtggcaaaatctgttcatcaagaggatccgttgtcct
tcaaagccttggtctcaacaagatgaggccatcatccggaccctggtttctgtgctcgtg
gcagaggagcagggagcaggcctgcagcagcccacagggattggccagcggccccggccc
atgtcatcggaggatgggccccaggcttcaatgaaaagctccaagaacagcccccaactg
cccaccaacaccaacaatgacaagtctcgtaggatgccagcaacctggagccttctacag
gggaaatcccaacacagagaagaggcctcattgcctatcaagcagctctctgatgagcct
cactcctccagtagctcttcctgctcagtgaccttggacagtccctcttatagcccctgt
tcttcctcctcaggaaagcagatcgcaaagccaccgtctccccagctggtcttctcttca
gtgcggtacttcatcatgaagagcagcaatgtgaggaacatagacatttctcagcagaaa
ggtatctggtctacaacaccaagcaatgagaccaaactcgccaaagccttcctggagaag
agcgctatcatcctcatcttctctgtccaaggctctgggcacttccagggctacgcccgc
atgacatcagtcattagtcaggagagctgccaggactggggcttcatgggactcggaggg
gtttttagtgtagagtggatccacaaggagagtcttcatttccagtgctcacaacacatc
ctcaacccgtggaatgaaaacaagaaggtccagatcagcagggacggacaggagttggag
ccacaagcaggcagccagctgctgttactgtgggagagaaactctgggaatcaagttcaa
taa
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integrated database retrieval system
