Cyclopterus lumpus (lumpfish): 117740234
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Entry
117740234 CDS
T09199
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117740234 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117740234 (prpf4)
Spliceosome [BR:
clum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117740234 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_EML
NBCH_WD40
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Vps41
Ge1_WD40
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR11_1st
Beta-prop_WDR19_1st
WD40_like
CAF20
DUF7779
Motif
Other DBs
NCBI-GeneID:
117740234
NCBI-ProteinID:
XP_034402387
Ensembl:
ENSCLMG00005012371
UniProt:
A0A8C3G0W4
LinkDB
All DBs
Position
12:3614687..3619608
Genome browser
AA seq
506 aa
AA seq
DB search
MSDDEDVAPAPKRTRVYYGSLEEKERERLSSEKGRGSDGVKAGIKAGNINISSGETLDLE
DRVSERQHDALAAFEQRRRARQITVSTDDTEVKAGLRALGEPIILFGEGPADRRERLRSV
LSVVGPDALKKSRREEERAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAMKRLESA
RALRDVAEATRAIRQQELQNSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCK
LWSVPDCNLIRTLRGHHTNVGAVVFRPESGISLEKSDVNLASCSTDGSVKLWNLESDEPV
ADIEGHSDRVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDIHFHPD
GSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGYHLATGSGDNTCKVWEL
RNRKCLYTVPAHQNLLSSVRFQPTDGHFLLTGAYDNLAKVWSHPGWTPLKTLAGHEGKVM
GVDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgatgaggacgtggctccggccccgaagaggactcgggtttactacggaagc
ctggaggagaaggagcgcgagcgcctgagctccgagaaggggagaggaagcgatggggtg
aaggccggcatcaaggcgggaaacatcaacatctcgtcaggagagactctggacctggag
gaccgggtcagcgagcggcagcatgatgcgctcgctgcgttcgagcagcggcggcgagcg
cgacagatcaccgtgtccaccgacgacaccgaggtgaaggccggcctccgggcgctcggg
gagccaatcatattgttcggagagggaccagctgaccgccgggagagactccgcagtgtt
ctgtcagttgttggtccagacgctctgaagaagtccaggagagaggaagagagagccaag
aggtcacaggacgagtgccagcagacatggtaccacgaaggctccgcctccctgaaggat
gcccgcctctggttggccaaatactctctgccgagggcgatgaagcggctggagtctgca
cgagctctaagggatgttgccgaggcaaccagggcgatccggcaacaagagctgcaaaac
agtctgaggaatctgaacaacttctgcagtcagatcggtgacgatcgaccaatcagcttc
tgccacttcagccccgactccaagatgctggccaccgcctcctggagtggtctgtgtaag
ctgtggtccgtccccgactgcaacctgattcgtacactcagaggacaccacaccaacgtc
ggcgcggtcgtcttccgcccggagtccgggatctctctcgaaaaatcagacgtcaacttg
gcctcctgctccaccgacgggtctgtgaagctgtggaacctagagagcgacgagccggtg
gcagacatcgagggccacagtgaccgagtgtcccgagtttcctggcatccctctggcagg
ttcctgggaaccaccagctatgataactcgtggcgtctctgggatctagaggttcaggag
gaaatcctccatcaggaaggtcacagtaaaggagtccacgacatccacttccaccctgat
gggtccctggctgctactggaggcctggatgccttcggtagggtttgggaccttcggact
ggacgatgcgtcgttttcctggagggacacctgaaggagatttacagcgttcacttctca
cccaacgggtatcacctggcgacaggaagtggtgataacacctgtaaggtttgggagctg
agaaacaggaagtgtctatacacagtccccgcccaccagaacctgctgtcttctgtccgc
tttcaacccacagacggtcacttcctgttgaccggagcttacgacaacttggcgaaggtt
tggagtcacccgggctggacgccgctgaagacgcttgccggacacgaggggaaggtgatg
ggcgtcgacgtgtcacctgacgggaagctgatcgccacctgctcctacgaccgcaccttc
aaactctggctgtcggagtga
DBGET
integrated database retrieval system
