Cyclopterus lumpus (lumpfish): 117740285
Help
Entry
117740285 CDS
T09199
Symbol
aff1
Name
(RefSeq) AF4/FMR2 family member 1 isoform X1
KO
K15184
AF4/FMR2 family member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117740285 (aff1)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Super elongation complex (SEC)
117740285 (aff1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AFF4_CHD
AF-4
AF4_int
DUF1666
Motif
Other DBs
NCBI-GeneID:
117740285
NCBI-ProteinID:
XP_034402466
LinkDB
All DBs
Position
12:6568086..6583887
Genome browser
AA seq
1157 aa
AA seq
DB search
MASQSSTYNEERNRLRLRAWEQRNQETSQAKELNSENVPLFGVPYKTNKGDELSNRIQGM
LGSYEDVNNPYPFAIEPLAIPTCVTFSHSDQGPPNTDKPTKPPFHNQIQYVSTQSQKASS
SNIYNSQPVRTSTASSPNHHGHSSTFSNASLNHSQLSISAHQQKRSEAHSDLRECVSLSH
EMSSQSPDAELPPFPHSSDHDNNDKDMDVSTFNLKQSPNDASLSQANKGNALPSQTFPSL
LSSKQPSVVMTKKPTAYVRPMDGQDQVVSESPELKSSPEPYVPLPELINKSDLGKMKILP
PFLETRSSEALCVEDILREMTHSWPPLLTAIQTPSPDEPSKSLFQAKEAERVSSCPGKKN
YETSPADPSQLIQQSSSASFEVAHSRVESASSSDSESSSRSESESEGTIEEPARLPVSNL
NVKTEPDAPAVTHGDWQLGNWIRSSQQNAGTDSQSGAHAAEGPAHKRPPPTHSSKLLASV
EVVDPTRASKPQLSTHQREFTDRVAKLQQRSENPQDNYNHQISPISPFGDSNSCSSSRKL
SLNKRSSIPEKAVCLDRAEAAISVKCEEVVATQDKDPSFTDGPKVKTKTGHGKKSKDKSD
TKRDGKRTSKRTSLDKRKAGDEPEVPVVLCGHCPLCGVQYPMRCSCPTQSHAQPDLLSPV
RLLRISSSKEKSESKLPHKTTHKNSEKTRQIAKSSRDPHRPSRSLLVKIDLRLISRVPPT
LENHQEIPGLAKRPALVIEQDGGGQDASTTHKLAKTSAKSKPKNVEVVNATLPKKKQRLE
NKNTSSNRASVKLERPCNSKDDREQKKAKKTPVPLQQPLTPKDPAKGPKVHKRSFGETQE
SSKEGVKRKDSSTKHKKSSGKHTEHPHVEKKPPKSSFDIPSSSQATRESLSNRPLFRLEE
RQYPVKHYIKEAKKLKHKADAESDKLSKAFNYLDAAMYFVESGIAMEKDPHISMSSYTMF
AETLELLKFVLKLKHSVDVSASPSEKDFLSLCLKCQSLLQMAMFRNKQKIALKYSKTLTE
HFSNSTTHNPSAVTLKVTDTPPSYTPNMPSPANTSSSSGPGSNLSVSGLAVDPVGSTVLV
PQAIGQVAFTYVNITMLFLSAHDIWEQAEELAQGGSGMLTELDTVIGPLSLTSSMSSMVG
YTRQGVHWLRLDSHKVK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcagtcgagtacatacaatgaagaaaggaaccgtcttcgcctccgtgcatgg
gaacagaggaaccaagaaacaagccaagccaaagaactcaactctgagaacgtgccgctc
tttggggtaccgtacaagacaaacaaaggggatgagctttccaatcgaatccaggggatg
cttggcagttatgaagatgtgaataatccatatccctttgctattgagccattggccatt
cctacttgtgtaaccttctcacactcagatcagggtccgccaaacacagataaaccaacc
aagcctccattccataaccaaatccagtacgtgtccacccaaagtcagaaagcctcatct
agtaacatttacaactctcagcccgtgaggacgtccactgcctcttctcctaatcatcat
ggacattcatccactttctcaaatgcttctttgaaccacagtcagctcagcatctcggcg
catcaacaaaagaggagtgaagcccactcggatctcagggagtgtgtcagcctttcccat
gaaatgtcttcccagtctcctgatgctgagctgccccctttcccacattccagtgaccat
gataacaatgacaaggacatggatgtttccacttttaatctaaaacagtcccccaacgat
gcgtctctgtcccaagcaaacaagggtaatgcgctaccttcccagaccttcccttcactc
ctctcgtcaaagcagcccagtgtagtcatgaccaagaagccaacagcgtatgtgcggccc
atggatggtcaggaccaggtggtcagcgagtcacctgagctgaagtcttcaccagagcca
tatgtacctctacctgagttaatcaacaaatccgatctaggcaaaatgaagatactgcca
ccatttctggagacgaggtcaagtgaagctctatgtgtcgaggacatcttgagggaaatg
acccactcgtggccccctctcctgacagctatacagacacctagtccagatgaaccctcc
aagtccctgttccaagccaaggaagcagagcgtgtctcttcttgtccaggaaaaaaaaac
tatgagacttctcctgcagatccatcccagctcatccagcagagctcctcggcttcattt
gaagtggcacattccagagtagagtccgccagctccagcgattcagagagtagctcaaga
tcagagtcggagagtgaaggcaccatcgaggagccagctcggctccctgtgagtaactta
aacgtcaaaaccgagcctgatgctccagcagtgacacatggtgattggcagttggggaac
tggattcggtccagccagcagaacgccggcactgacagccaaagtggtgcacacgccgcc
gagggacctgctcacaaacggccgccgcccactcatagctcaaagctcttagccagcgta
gaggtcgtcgaccccaccagggcgtccaaacctcagctttcaactcaccagagagagttc
actgatcgggttgcaaagctccagcagcgcagcgaaaaccctcaggacaactataaccat
caaattagcccaatatccccctttggtgattcgaacagctgtagcagttccagaaagctt
tcattgaacaagcgatcgtcaataccagagaaggcagtttgcctagatcgcgctgaagca
gctatcagtgtaaagtgtgaggaagttgtcgccacgcaagacaaagaccccagtttcaca
gatggacccaaggtaaagacgaaaacaggacatggcaagaaaagcaaggataaaagtgac
actaaaagagacggtaaaaggacttctaaacgcacgtcccttgacaaacggaaggctgga
gacgagcctgaagtcccagtggtcctgtgtggtcattgtccattatgtggtgtgcaatat
cctatgcgctgctcctgccccacccaaagtcatgctcagcccgacctgctgtctccagtc
cgactacttagaatcagtagtagcaaagaaaagtctgagtccaagcttcctcacaaaaca
acccacaagaactcagagaagactagacagatagccaagagttctcgtgacccccacagg
ccttctagatctctactggtgaagattgatctaagactgatctcaagagtgcccccgacc
ctggaaaaccaccaggagatccccggccttgcaaagagaccagcactggtcatagagcaa
gatggagggggccaggatgcttctactacacacaaactcgccaaaaccagtgcaaagagt
aaacctaaaaatgttgaggtagtcaatgcaactcttcccaagaagaaacagaggctggaa
aacaagaatacctcatcaaatcgtgcttctgtcaaactggaacgtccctgcaattcaaaa
gatgaccgagagcaaaagaaggcaaagaaaacccctgttcctctgcagcagcccctgaca
cccaaagaccccgctaaaggcccaaaggtgcacaaacgcagttttggggaaacgcaggag
tccagtaaggagggtgtaaagcgcaaggactcgagcacaaagcacaagaagagcagtgga
aagcacacggagcacccacacgttgaaaagaagccaccaaagagcagcttcgacatccca
tcatcttcacaggccaccagggaatctttgagcaacaggcccttgttcagattagaggag
aggcagtatccagtaaagcattacataaaggaggccaaaaaactgaagcacaaagccgat
gcagagtccgataagctcagtaaagctttcaactacttggatgcggccatgtactttgtt
gaaagtggcattgccatggaaaaagatccacacatttcaatgtcttcctacactatgttt
gcagagacattggaactgctcaagtttgtactgaaacttaaacattcagtggacgtctct
gcttcaccttcagaaaaggactttttatctttgtgtctgaagtgccagtctctgctgcag
atggccatgtttcgcaacaaacaaaaaattgcactcaagtattcaaagaccctcactgaa
cacttcagtaactcaacaactcacaatccctctgcagtaacattgaaagtgacagacacc
cccccgtcctacacccccaacatgccgtctccagccaacacctccagcagctccggtccc
ggctccaacctcagcgtcagtgggttggctgtggacccagtcggaagcaccgtgctagtt
ccccaggccattgggcaggtggcgttcacctacgtcaacatcacaatgttattcttgagc
gctcacgacatctgggagcaggcggaggagctcgcacaaggaggcagcggcatgctgaca
gagctggacacggttatcggcccattgagcctcacgtccagtatgagctctatggtcggc
tatacgaggcagggcgtccactggctgaggctggacagccacaaggtaaagtga
DBGET
integrated database retrieval system
