Cyclopterus lumpus (lumpfish): 117740330
Help
Entry
117740330 CDS
T09199
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04136
Autophagy - other
clum04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117740330 (atg13)
04136 Autophagy - other
117740330 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117740330 (atg13)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117740330 (atg13)
Membrane trafficking [BR:
clum04131
]
Autophagy
Autophagosome formation proteins
ULK complex
117740330 (atg13)
Atg1 complex
117740330 (atg13)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
117740330 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
117740330
NCBI-ProteinID:
XP_034402562
Ensembl:
ENSCLMG00005006491
LinkDB
All DBs
Position
2:10152960..10159709
Genome browser
AA seq
511 aa
AA seq
DB search
MDSGLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKIGTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYNR
LSVLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLNGLGEGFQMVRVGVVGTPV
GTVTLTCAYRTNLAFMSNRQFERSAPIMGIIVDHFVDPPGGGPRPVNMGHPCNYRAPDED
DGGQYAGVQDSQEVCTTSFSTSPPSQLYASRLSYHPPAFAGAAELCHPAANQVLHAGKDH
GGVVPVPGQPPHGADAHPTAENAANTPGSSGEDDGLTHSGERRRRRRRDEGRRSASPSDP
VVSLNAFTRKIGAFVNKPNAPVTASSLDLPFAAFAPRGLDLEENDPMVQPPDSPTCPSPL
QASLHSQGSEGSGQQDDFVMVDFRPAFSKDDLLPMDLGTFYREFQNPPQLASLSLHISAQ
SMADDLDSLPEKLAVYEKNIDEFDAFVDMLQ
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggacagtggcctgagtccccaggataaaaaggacttggacaagttcattaagttcttt
gccttgaagactgtccaggtgattgtccaagctcgtcttggagagaagatcggcactcgc
tcgtcctcatcgcctactggctctgattggtttaatttggccatcaaagacatcccagaa
gtgactcatgaagccaagaaggcactggctggccaacttccaggcatcgggcgctccatg
tgtgtcgagatctccctcaagacgtcagagggagactcaatggagttggagacttggtgc
ctggaaatgaatgaaaagtgcgataaggacatcaaggtgtcgtatacagtctacaaccgt
ctgtctgtccttctgaagtctctgctggccatcaccagagtaacgcccgcctataaacta
tccagaaagcagggccacgactatgtcatattatacaggatttactttggggaagtccag
ctcaatggattgggagaaggttttcagatggtgcgagtcggcgtcgtcggcaccccagtt
ggcacggtcacacttacgtgtgcttaccgcaccaacctggctttcatgtccaacagacag
tttgagcggtcggctccgatcatggggatcatcgtggatcactttgtggacccccccggc
ggcggcccgaggcccgtgaacatggggcatccctgcaactacagagctccagatgaagat
gacggaggacaatatgcaggggttcaagattcacaggaggtctgcaccacctccttctcc
acctcccctccctcacagctgtatgcttccaggttgtcatatcatcctccagctttcgca
ggagctgctgagctctgtcaccctgctgcaaaccaggtgttgcatgctgggaaggatcat
ggaggggtggtgccggttcctggccagcctcctcatggagccgacgctcatccgacggcg
gagaacgctgccaacacacctggcagcagcggcgaggatgacggcctgacgcacagcgga
gagaggaggaggaggaggaggcgggacgaagggcggaggagcgcttcgccctcggaccct
gtggtgtctctcaacgcattcaccaggaagatcggcgcctttgtcaataaacccaacgca
ccggtaacagcatccagtctggacctgccatttgctgcatttgctcctcgaggtttggac
ttggaggagaatgatcccatggtgcagcctccagactcccccacctgcccctcacccctg
caggccagcctccattctcagggctccgagggatcggggcagcaggatgacttcgtcatg
gtcgactttcgtccggccttctctaaagacgacttgttgccgatggatctgggcactttc
tacagagagtttcaaaacccccctcaactggccagcctctcgctccacatcagcgctcag
tcgatggccgacgacctggactcgctgccagagaaactggcggtttatgagaaaaacatc
gacgagtttgacgcctttgtggacatgctccagtag
DBGET
integrated database retrieval system
