Cyclopterus lumpus (lumpfish): 117740335
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Entry
117740335 CDS
T09199
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117740335 (ddx55)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117740335 (ddx55)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
Pre-60S particles
Helicases
117740335 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
SART-1
Motif
Other DBs
NCBI-GeneID:
117740335
NCBI-ProteinID:
XP_034402565
Ensembl:
ENSCLMG00005015676
LinkDB
All DBs
Position
12:complement(2324777..2330834)
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AA seq
609 aa
AA seq
DB search
MATRPSGGDEQRSNMDSSTEGTWATLPVKLTDGILQTLHEVNFTHMTPVQSACIPLFMSN
KDVAAEAVTGSGKTLAFVIPIIELLLRREEKLKKMQVGALVITPTRELALQISEVMALFT
QKFPQFTQILLIGGTNPIDDVDKFKDKGANIVIATPGRLEDMFRRKAEGLDLASAVKSLD
VLVLDEADRLLEMGFEASLNTILGHLPKQRRTGLFSATQTQELEKLVRAGLRNPVRIAVK
EKGVEESAVAQKTPSRLCNYYTICRTENKFNNLVAFLRQHKLEKHLIFFSTCACVEYYGR
ALETLVKKVTVHCIHGKMKHKRNKIFADFRALKNGILVCTDVMARGIDIPDVNWVLQYDP
PSSACAFVHRCGRTARIGNQGNALVFLLPMEESYVNFLCINQKCPLQKMVLTGEVVDVLP
KVKALALADRAMFDRGMRAFVSYVQAYAKHECSLIFRLKDLNLAHLARGFALLRMPKMPE
LKDKTFPGFTRTPMDTDTIRYKDKHREKQRQKMLAELKEKVKTPFVKRDYIKNKSWSKQT
TKKERRKKRSAKRKLEEGSDVEDEDMQELLNDTRLLKRLKKGKISEEDFEKQMASETETQ
HGATGKPIN
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcggccgagcggcggcgacgaacagcgttccaacatggacagctcgaccgag
gggacgtgggccactttaccggttaaactcaccgacgggattttacagacgctccacgaa
gtgaacttcacgcacatgacacctgtccagtcggcttgtattccgctcttcatgagcaac
aaagatgtggctgctgaggcggtgaccggcagcggaaagacgctcgccttcgtcattccc
atcatagagctgctcctgaggagagaagagaagctgaagaagatgcaggtcggtgcgctg
gtgatcacccccacaagagaactggcccttcagatcagcgaagtgatggcgctgttcact
cagaagtttccacagtttacgcagattttgctgatcggtggcaccaacccgatagacgac
gtggacaagttcaaggataaaggggccaacattgtgattgcgacaccaggccgcctggag
gacatgttcaggaggaaggcggagggtctggacctggccagcgcagtcaagagtctggac
gtgctggttctggacgaggccgaccggctgctggagatgggcttcgaggccagtctgaac
accatcttgggccacctgccgaaacagagacggacgggcttgttttcggccactcagact
caggagctggagaagctggtgcgcgccggcctcaggaacccggtgcgcatcgcggtgaag
gagaagggcgtggaggagagcgccgtggcccagaagacgccgtccaggctctgcaactac
tacaccatttgcagaacagagaacaagttcaacaacctggtggcgttcctcaggcaacac
aagctcgagaagcacctgatcttcttcagtacgtgtgcatgtgtggagtactacgggcgc
gctctggagacgctggtcaagaaggtcaccgtccactgcatccacggcaagatgaagcac
aagcgcaacaagatctttgccgactttcgggccctgaaaaatgggatcttggtgtgtacg
gacgtgatggcccgagggatcgatatccccgatgtcaactgggtgctgcagtatgatcct
cccagcagtgcctgtgcgtttgtgcatcgatgcggacgcactgctcgtatcggtaaccag
ggcaacgccctcgtcttcctgctgccgatggaggagtcctacgtcaacttcctgtgcatc
aaccagaaatgccccctccagaagatggtcctcacgggggaggtggtggacgtgctgccc
aaagtgaaggccctggctctggccgaccgggccatgtttgaccgaggcatgagagccttc
gtgtcgtacgtccaggcctacgccaaacacgagtgcagcctcatcttcaggctcaaagat
ctgaacttggcgcacctggcccgcggcttcgccctcctccgcatgccgaagatgccggag
ctgaaggacaagacgttccccggcttcacccggacgccgatggacacggacaccatccgc
tacaaggacaagcaccgggagaagcagcggcagaagatgctggcggagctgaaggagaag
gtgaagacgcccttcgtcaagagggactacatcaagaacaagtcctggtccaagcagacc
accaagaaggaacgcaggaagaagaggtccgccaagaggaagctcgaagagggctccgac
gtggaggacgaagacatgcaggagcttttaaatgacactcgcctcctcaagaggctgaag
aaggggaagatcagcgaggaggatttcgagaagcagatggcgagcgagacggagacccaa
cacggcgccaccggcaaaccgatcaattaa
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