Cyclopterus lumpus (lumpfish): 117740438
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Entry
117740438 CDS
T09199
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117740438
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
117740438
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1_C
UBA_N4BP1
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
117740438
NCBI-ProteinID:
XP_034402733
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All DBs
Position
2:complement(9957869..9971456)
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AA seq
943 aa
AA seq
DB search
MGQKDHVEAGAGHILDLGLDLEYLHIAGSDRQAGGSDGPPAMEEQGERSGNSSTADSPPP
AVAEGNAGSDAECEPHGECGSTPSKNAHQPLCRTQCVDLGTEGPPEPSSEPSPEREHKPP
PSSPCKHPPEPPSNPSSSEPAPEAGGKEYQAKLEFALKLGYSEETVRLVLSKLGPDTLIN
DILGELVKLGTKSDSEQPAGSLASISSSSSSSSSCGCSDLLDSQRSDSPCPPDALSDQDN
LRPVVLDGSNVAMSHGNKEVFSCQGIQLAVDWFLERGHHDITVFVPAWRKEQSRPDAPIT
DQDILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKP
EWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPIMPEQKKQPCPYGKKCTY
GHKCKYYHPERGAHPQRAVADELRASAKTCVTTKNQGDTGLVKSHSVPAGSIEAKKGAQK
RQSDPSIRALSYSDAEEKLAKGRAESQKNIMCGSSSGISMSSAPGGPPSSFSLPQDQQSR
AVTPHSLPAPSHDLYPHCESPDLSYYSVTRAYSGLSLSSRRSPDCRFPNDTDLRLGSMGS
AGSECGSESSVSCGSSCDSYGERPCPGCPAETLLDDGVHFANPHSRLYPHHAAANHDLCG
LHPADYSSMQHAHTANAGAHGYHLRGQSCAHDQPPPEAPPKRPLYPLPPHLQHQPLTARS
SCPGDYHSLPQSNPHPPGSPLGRCLAPTRGESVSESHLYEHLSTSHHHHRTKALPSWDTY
YRQPLLPPSRYEPSAYQSLPDTRQASWHAPPWAQDGYAQHHSSHPALHPSPTHYLNHPPP
RAHSPHPPHPSGTPLPPYPSHSAHLAMPSHAPPSYMPQHSESPAHGRYGDMREKVYVNLC
NIFPSELVSRVMARSPHITDPQQLAAAILSEKAQTGSDSKNHE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaaggaccatgtggaggcaggagcaggccacatcctcgacctggggctggat
ttggagtatctccacatagcagggtctgaccggcaggctggcggctctgacgggccccct
gctatggaggagcagggggagcgctccggcaacagcagcaccgccgattcccctcctccg
gctgtggcggaaggaaacgccgggtctgatgcggagtgcgagccgcatggagagtgcggg
tcaactccgagtaagaacgcccaccagccgctttgtcggacccaatgtgtggacttaggc
accgagggtcctcctgaaccctcgtctgagccctcaccagagcgtgaacacaagccccca
cccagctcgccatgcaagcacccaccagagcctccttccaatccctcctcgtcagagccg
gcgcccgaggccggcggtaaggagtaccaggcgaagctggagtttgccctgaagctgggc
tactcggaggagacggtgcggctggtgctgtccaagctgggccctgacaccctcatcaat
gacatactgggagagctggtcaaactgggcaccaagtcagacagcgagcagccggccgga
tcattagcctctatctcatcttcttcgtcctcctcttcctcttgtggctgttctgatctg
ctggatagccagaggtcggactcgccctgtccgccggacgctctgagcgaccaggacaac
ctgcggccggttgtcttggacggcagcaacgtagccatgagccacggcaacaaggaagtg
ttttcctgccagggcatccagctggctgtggattggttcctagagcgaggccatcatgac
atcacagtgtttgtgccggcttggaggaaagagcagtcgcgccccgacgccccgataact
gatcaggacatcctgcgtcgcctagagaaggaaaagatcctggtcttcactccttcgcgg
cgcgtccaaggtcgccgcgtggtttgctacgacgaccgcttcatcgtcaagctggcctac
gagtcagacggcatcatcgtctccaacgataactaccgagacctggctaacgagaagccc
gagtggaagaagttcatcgacgagcggctgctcatgtattcctttgtcaacgacaaattc
atgcccccagacgaccctctcggtcgtcatggccccagcttagacaacttcctgaggaaa
agacccattatgcctgagcagaagaaacagccctgcccatacggaaagaagtgcacttac
ggccacaagtgtaagtactaccacccagaaagaggtgctcatcctcagcgtgctgtggct
gatgagctgcgtgccagtgccaagacctgtgtcaccacaaagaaccagggggacaccggc
ttggtgaagagccacagtgtgccagctggcagcatcgaggcaaagaaaggcgcccagaaa
aggcagtcggaccccagcatccgagctctgtcgtacagcgacgcggaggagaagctggca
aaagggagggcggaaagccagaagaacatcatgtgtggcagtagcagtggtataagcatg
tcctcagccccgggaggccccccatccagtttcagccttccccaggaccagcagtccaga
gcggtgactccccatagtctgccagcccccagccatgacctttaccctcactgtgagtct
ccagacttgagctactactcagtaacgcgtgcttactccggcctgagcctctcctccagg
cggagcccggactgccgcttccccaatgacacggacctgcggctcggctccatgggctcg
gcgggctccgagtgcggcagcgagagcagcgtgagttgcggcagcagctgcgactcgtac
ggcgagcggccgtgtcccgggtgccccgcggagaccttgctggacgacggcgtccatttt
gctaatccccacagccggctgtatccccaccacgccgcggcaaaccatgacctatgtggc
cttcatcctgccgattactcgagcatgcagcacgcccacacggctaacgcgggagcacac
ggctaccacctgagagggcagtcctgtgctcacgatcagcctccgccggaggctcctccg
aagcgccccctctacccgttgcccccccacctccagcaccagcccctgaccgctcgctcc
agctgcccaggcgactaccactctctgccccagtccaaccctcacccccctggctctcct
ctgggccgctgcctggccccgacgcgaggcgagagcgtgtcagaatctcatctgtatgaa
cacctgtccacatcgcaccatcaccaccggacaaaagcgctgcccagctgggacacgtac
tacaggcagcctctgctgccgccgtccaggtacgagccatccgcctatcagagtctgccg
gacacgcgccaggcgtcctggcacgcccctccctgggcgcaggacggctacgcccagcac
cactcctcccacccggctctccacccgtccccgacacactacttgaaccacccgccgccg
cgggcccactctcctcacccgcctcacccatccggcactcctctcccgccatacccgtct
cacagcgctcacctcgcgatgccctcccacgctcccccctcctacatgccgcagcactct
gagtcgcctgcacacggccgctatggggacatgagggagaaagtgtacgtcaacctgtgt
aacatcttcccctcggagctggtgagccgggtgatggccaggagcccccatatcacagac
ccccagcagctggcagctgctatactttcggagaaagcccaaaccggctccgactctaag
aaccacgagtag
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