Cyclopterus lumpus (lumpfish): 117740550
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Entry
117740550 CDS
T09199
Symbol
nup188
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117740550 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117740550 (nup188)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117740550 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
117740550
NCBI-ProteinID:
XP_034402910
Ensembl:
ENSCLMG00005016116
LinkDB
All DBs
Position
12:complement(5238475..5252217)
Genome browser
AA seq
1752 aa
AA seq
DB search
MAESDMSVRSSRELWTILLGRSALREQAQIEAELDRHWDRLHQGLSYYKPPSASSAGKVK
ENKAVAQPLKDFGLRISKLLALDEQQSVQILQCYLQEDYRGTRNSLKVVLKDERQSQALL
LKVAGYYYEERMCLLRCVLLLLTYFQDERHPYRAEYSNCVNKLEKDLVSRYQLQFENLFK
AEAPTWETHGNLMTERQVSLWFLQCLREQSLLLEIIFLYYAYFEMSPSDLLSFTKMFKEE
GFGLRQTNRHLVDKSMDSLVDRIGYLSSLILVEGMDIDFLHKCALEDCTLQHQFSNAPDV
IKEMDQLLLTFGDIPHHGPVLLAWVLLRHTLRPDESLQPDESIHMIGKIGNTALQLGVFK
YISTMLKGLGVSGNNCTASTAKMCIYGLLSFVITSFEEESLQTDGVATQCSHLIDAACEV
LSAPSLAEVFWEMKPNMGLGMILDSAVGMFPHKIGPLLQLLTALLSNKSTVTKVYNVLDK
MSYYTQVYKHKPNDIISKDDETLWRRQTPKLLYPLGSGQTNLWMPQGVLGQVMIGGDQGY
VVRWEHSYSSWTLFTCEVEMLLHVVSTADVIAHCARVKPILDLVHKIISTDWTVSDCLLP
LTSRIYMLLQRLTSVINPPVDVIASCVNCLSVLAARMPGKVWSSLHHTGFLPFASSPLTS
MPQCVSAEGMKAGNYGTLLVQIEQPKGEYAVTIAFLRLITTLVKGQLGSTQNKGLIPCVL
LVLKEMLPTYHKWRYNTYGVRERIGCLILELIHAILNLSPEGEDQASTPSLQSLCIYSLA
NTEAGQAVVNIMGVGVDTIDMVLAAQPSSCGSEGPGQILIQTVKLAFSVTNNVIRLKPPS
DVVSPLEQALTQHGGHGNNLIVVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVNACLG
SDAAPIRDAFLTRLQSKTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGTEGLKEF
LLGEWSCLHVVLELIDSKQQGKYWCPPLLHRAALAFLLALWQDRRDSAISVLRAKERFWE
NLTTPLFGTLTPPSDTTEPCVLETCAFVMKIIGLEIYYVVRGSLEPSLKDGLQKFSNARR
YEYWSQYVKSLVCHVAEMEEEGISSFPETQMLISAWRMLLILSTSHSDVMQLTEDSTKLK
LFMDVLDGTKAALTTPMSVSCLRLGSMMATLLLILLKQWRSVVATAPDILSPLSLILESV
LQADQQMMERTKAKIFSALISVLQIQGLNGGDISQLPQLLLSVCETVKDEALALIDNTRH
MSQTGDAVEDEDSMETDSFRGPQKDQRDGVGVLALHLAKELCRSDEDGEHWVSVMRQIPV
LPSVLSAIELSLRSKHNLYFTEAALHLLLTLARTPQGADAVAGAGVIQTICLPLLSVYEV
TSNGASQSFSRKSQDSACWPGVYRLCMSLMESLLKTLRYNFINDALDFVGVHQERILQCL
NAVRTVQSLACLDEADHTVGFLLQLSSFCKEWQFHLPKLLRDVQVNLCYLCQTCTYLLHS
KKMLHHYLQAKNGDALPPVPLARTQRAPQTPSKEAAGGGEREEAEQKALLAVQCSLLKIL
SKTLATLQHFTPDCCQILLDQSMDLAEYRTLFVLSFTTPAFDPEVAPSFGTLLATINVAL
SMLSEMEKKKEPVSLNIASLVSVEEIQALKSLLMFTMENCFYVLISQAVRCLKDPSILPR
DKQRLKQELSSELSTLLSSLSRHFRRGSPSSPSSGILPITQSKPPTPGSKASQEGQEPLI
QFVQAFVRLVQR
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcagacatgagcgtcaggagcagtcgagaactatggaccatattgctggga
agatctgccttgcgagagcaggctcaaatagaggcagagcttgacagacactgggaccga
ctgcatcaaggactaagttactataagccacccagcgcatcctctgctggcaaagtgaag
gagaacaaagctgttgcgcaaccattgaaggattttggtctacggatcagtaaactattg
gctcttgatgaacaacagagtgtgcagattttacagtgttacctgcaggaggactaccga
ggaacgcgcaattccttgaaggttgttctcaaggatgagcgacaaagccaggcactgctc
cttaaggtagccggctattactatgaggagcgcatgtgtctgctcagatgtgtcctgctc
ctactgacatactttcaggatgagcgacatccctacagggcagagtacagtaactgtgtc
aataaactggagaaggatctggtgagcaggtaccagttgcagtttgaaaacctcttcaaa
gcagaagcaccaacatgggaaactcacggaaacctcatgacggagaggcaggtgtcactc
tggttcctgcagtgtctgagggaacagtctctgctgctggagatcatctttctgtattac
gcctactttgagatgagcccatccgacctgctgagcttcaccaaaatgttcaaagaagaa
ggcttcgggttgcggcagaccaacagacacctcgtagacaagagcatggactcgctggtt
gaccgcattggatatttgagctctcttatcctggttgagggaatggacatagacttcctc
cacaagtgtgctctggaagactgcacattgcagcaccagttctccaatgctcctgacgtg
atcaaggagatggatcagctgctcttgacatttggcgacatccctcatcacgggccggtg
ctgctggcctgggtcctgctgagacacactctgcgaccagacgagtcgctgcagccggac
gagtccatccacatgatcgggaagataggcaacaccgccctgcagctgggggttttcaag
tacatttcaaccatgctgaagggccttggcgtctcggggaataattgcacagcaagcaca
gcaaagatgtgcatttacggtctcctctcatttgtgatcacttcttttgaagaggaaagc
ctacagaccgacggtgtggcgacgcagtgctcccacctgatcgacgctgcctgtgaggtc
ctttctgctcccagtctggctgaagtcttttgggaaatgaaaccgaacatggggttggga
atgatcctggacagcgcagtcgggatgttcccccataagatcgggcccctgttgcagctt
ctaacggccctcctctcaaacaagtcgactgttacaaaggtgtataatgttttggataag
atgtcctactacacgcaagtttacaaacataagcccaatgatatcatctccaaggatgac
gagacactttggaggagacaaacaccaaaactcctctacccgctcggctcagggcagaca
aacctgtggatgccacaaggagtgctgggccaggtgatgattggaggcgatcagggctac
gtggtccgctgggaacactcttacagctcctggacgctcttcacctgtgaggtggagatg
ctgctccatgttgtatccactgcagatgttatagctcactgtgcacgcgtgaagcccatc
ctggatctggtccataagatcataagcacagactggaccgtgtcggattgtctgttgcct
ctcacttcacgcatctacatgttgctgcagaggttaacttcagtcatcaaccctccagtg
gacgtgatcgcctcctgtgtgaactgcctctctgtgctggctgcaaggatgcctgggaag
gtgtggtccagtctgcaccacacaggtttcctcccctttgcctccagccccctgaccagc
atgcctcagtgtgtaagtgctgaagggatgaaggcgggtaactatggcaccctgctggtc
cagattgagcagcccaagggggagtatgctgtgaccatcgccttccttcgtctcattacg
accttggtcaagggtcagctgggcagcacgcagaacaaaggcctgatcccctgcgtgctg
ctggtgttgaaggagatgctgcccacttaccacaagtggcgttacaacacctatggagtc
agggagcggatcggctgtctcatcctggagctgatccatgccatcctcaatctgagtccg
gagggagaggaccaggccagcactccctccctgcagtctctgtgcatctacagcctggca
aacacggaggccggacaggcagtcgtcaacatcatgggagtcggagtggacaccatagat
atggtcctggctgcacagcccagcagctgtggctctgagggtcccggtcagatcctgatc
cagaccgtaaaactggctttctccgtcaccaacaacgtcatccgcctgaagccgccgtct
gacgtggtgtcccctctggagcaggccctgacgcaacacggcggccacggcaacaacctc
atagtggttttggccaagtacatttaccacaaacacgacccggcgctgcctcgcctggcc
atccagctgctcaaaaggcttgccacggtggcgcccatgtcggtcaacgcttgcctcggc
agcgacgcggcgcccatcagggacgcgtttctcacgcggctgcagagcaagacggaagac
atgaggatcaaggtcatgattctcgagttcctcaccgtcgccgtggaaacgcagcccggc
ctcatcgagcttttcctcaacctggaagtaaaagatggaacggaggggttaaaggagttt
ctgctcggcgagtggagctgtcttcacgtggtgctggagctcatcgactccaaacagcag
gggaagtactggtgccccccgctgctccaccgggccgccctggccttccttctcgccctc
tggcaggatcgcagagacagcgccatctccgtgttacgtgccaaagagaggttttgggaa
aatttgacgacgcctctctttggaaccctcactccaccttcagataccacggagccgtgt
gttctggagacgtgtgcttttgtcatgaaaatcattggcctcgagatctactatgttgtc
aggggttccttggagccgtctctgaaggacgggcttcagaagttttccaatgcacgacgg
tacgagtactggtcccagtatgtcaagtcgctggtgtgccacgtagcggagatggaggag
gaaggcatcagctccttccccgagacccagatgttaatctctgcctggcgaatgctgcta
attctttccacaagccactccgatgtgatgcaactaacggaggactcgaccaaactgaag
cttttcatggatgtcctggatgggaccaaagctgctctgactacacccatgtctgtgtct
tgtcttcgtcttggctccatgatggccactctgctcctcatcctcctcaagcagtggagg
agtgtggtagccacagctcctgacatcctgtctcccctctccctgatcctggagagtgtc
ctgcaagctgaccagcagatgatggagagaaccaaagccaaaatcttctctgcactcatt
tctgtgctgcagattcagggacttaacggtggcgatatttcccagctgccccagctgttg
ctgtccgtgtgcgagacggtgaaagacgaggccctggcgctcatcgacaacactcgccac
atgagccagacgggggacgcggtggaggacgaggacagcatggagacggactcctttcgc
ggcccgcagaaggaccagagagacggggtgggcgtgctagcgctgcacttggcgaaggag
ctgtgtcgctccgatgaggacggggagcattgggtctcggtgatgaggcagattccagtt
ctcccctcggtgctcagcgccatcgagctcagcctgcgatccaaacacaacctctacttc
accgaggctgcactccacctgctgctcactctggcccgcactcctcagggggcagatgct
gttgcaggagctggagtcatccagacgatctgcctccctctgctgagtgtctacgaggtg
acctcaaacggagcctcacagagtttctcccggaagtcccaggactccgcctgctggccg
ggggtgtaccgcctctgcatgtctttaatggagagtctgctgaagacgctgcgctacaac
ttcatcaacgacgccctggactttgtcggagttcatcaagaacgcatactccagtgtctg
aatgcggtgcggacggtgcagagcctcgcgtgtttggacgaggcggatcacacggtcggt
ttcctgctgcagctctcgagcttctgtaaggagtggcagttccacctgcccaaactgctc
cgagatgtgcaggtgaacctgtgttacctgtgccagacctgcacgtatctgctccacagc
aagaagatgctgcatcactacctccaggccaaaaatggcgacgctttgcctccggttccc
cttgccaggacgcagcgagccccccagaccccgtctaaagaagcagcaggtggaggtgag
cgagaggaagctgagcagaaggccttgctcgctgtgcagtgcagtcttctgaagatcctt
agcaaaaccctggcaactctgcagcacttcactccagactgctgccagattctcctggac
cagagcatggacctcgccgagtatcgaaccctgtttgtgctcagcttcacaactccggcg
ttcgaccccgaagtggctccttcgtttggaaccctgctggccaccatcaacgtggccctg
agcatgttgagcgagatggagaagaagaaagagcccgtttccttgaacatcgcctcactg
gtctcagtggaggagatccaggctctgaagtcattgctgatgttcaccatggagaactgt
ttctacgtgctgatctctcaggcggtgcgatgcctcaaagatccctccatcctccctcga
gacaaacaaagactcaagcaggagctcagctctgaactgagcactctactctccagcctt
tcccgacacttccgcaggggctctccgtcatctccgtccagcggcatcctccccatcacc
caatccaagccccccacacccggctccaaggccagccaggaaggccaggagcccttaatc
cagttcgttcaggccttcgtgagactcgtgcagagatga
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integrated database retrieval system
