Cyclopterus lumpus (lumpfish): 117740582
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Entry
117740582 CDS
T09199
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117740582
NCBI-ProteinID:
XP_034402960
Ensembl:
ENSCLMG00005005494
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Position
2:11568377..11579710
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AA seq
746 aa
AA seq
DB search
MAAVPLHSLCLPLTVLQLCLLPLAHGGAYYGHKQPPQQHQPLPQYNDGYPQQQFLGNEMP
HLPYGKEGSSLPQYGKELPQLPLQMGKERPLIEGKGQTFPRGAKGPPPRIPGGEGLREGP
QGVQGPTGPTGPPGPQGPPGLPGQGLSGLPGKPGPPGPQGYPGIGKPGMPGLPGKPGGPG
SQGPKGDLGPHGGEGQTGLSGPPGLPGPPGLPGISKPGGQGFPGQLGPLGEPGTKGAPGF
PGPPGSKGEKGHGQPGLPGLKGPHGPPGSPGNVGIPGVGKPGLNGQPGQPGIPGKLGPPG
DSGPAGPPGERGQPGPSGLPGIGKPGKDGLRGQPGFSGGKGESGPPGLPGGPGLPGYGKP
GFPGPKGHKGHAGLPGPSGLKGDKGHAGLPGVIGSTGPSGTPGPPGPMGNPGSLGFPGQK
GEDGVGGQKGYPGTKGESGSPGLPGQPGSSGVGGQLGLRGLQGPIGPKGEAGTKGSPGSP
GAAGLTGSRGGGGQPGETGYRGPQGIPGLTGPGGPLGPPGRPGPKGETGLPGKPGYPGEG
KLGSPGHAGPQGNPGPSGPAGLPGQPGQPGPPGPPGLSAASPDLGQILPATGPYTGQKQG
YKKLKNGGDAGGNGAEMPAFTAKLTNPFPLVGSPVIFDKLLHNGNQDYNPQNGVFTCSVP
GVYYFAYHVHCKGSNVWVALMKNNEPVMYTYDEYKKGLLDQASGSAVLPLREGDTVYMQL
PSDQAAGLYAGQYVHSTFSGYLLYPM
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtacccctccactctctctgcctacccctcacagtgctgcagctgtgttta
ttacccctggcccacggcggggcgtattatggacataaacagcctcctcagcagcaccag
cccttgcctcagtacaatgatgggtaccctcagcagcagttcttggggaacgagatgccg
cacctgccttatggcaaagaagggtcatcgctgcctcagtatggaaaagagcttcctcag
ctgcctttgcaaatgggcaaagagaggccactgattgaaggcaaaggacaaacgttcccc
aggggggccaaaggtccacctccccgtattcccggtggagaaggtctcagagagggaccg
caaggagttcagggtcccacgggaccaacgggaccgccgggaccgcaaggtccccctggg
ctaccgggccagggattgtcggggctaccgggaaagccggggcctcccggtcctcaaggc
tacccgggaattggaaaacctggcatgccaggattgccaggcaaacccggaggacccgga
tcgcaagggccaaaaggtgacctcggtcctcacggtggcgaaggacaaactggactttct
gggcctccggggctcccgggtccccccggactcccggggatttcaaaaccagggggtcaa
gggtttccgggccagctgggtcctctaggggagcccggcacaaaaggtgcacctgggttt
cccggtcctccgggctccaagggagagaaaggacacggtcagcctggtttgccaggtttg
aaagggccgcacggaccaccgggttcacctggaaacgtaggcatccctggggtcggcaaa
cctggcttgaacggtcaacctggacaaccggggataccgggaaaactcggtcctcctgga
gattcggggccggcagggcctcccggcgaaagaggtcaaccgggaccatcgggcttgccg
ggaattggaaaaccaggaaaagacggtttaagaggacaaccggggttctctggagggaaa
ggagaatccggccctcccggtttaccagggggcccaggcttgccaggttatggtaaacca
ggctttccgggacccaaaggtcacaagggacacgccggtcttcctggaccttcgggccta
aaaggcgataaagggcacgcgggtcttccgggggtcattggttccactggtcctagcggt
acgcccggcccaccgggaccgatggggaatcccggtagtctcggcttcccggggcaaaag
ggagaagacggtgtcgggggacaaaaaggatatccaggaacgaagggtgaatcggggtcc
ccggggcttccgggacagccgggttcgtccggtgtcggtggacaactgggtctgagaggt
ttacaagggcctatcggacctaagggagaagccggcacaaagggttcacctggttcccct
ggtgcagcgggattaactggatcgagaggagggggggggcaacccggagagacgggctac
cggggaccacaaggtatccctgggcttacgggaccgggaggaccactcggacctcccggg
cggccggggccaaaaggcgaaacgggcctacctggcaaacctggctatcccggggaggga
aagctaggatcccccggtcacgcgggtcctcaaggtaaccctgggccgagtggccctgcc
ggacttccggggcaaccgggacaaccgggaccccccggtcctcccggactatctgccgca
tctcccgacctcggacagatcctaccggcgacgggcccgtacactgggcaaaaacaaggt
tacaagaagctaaagaatggaggcgacgcgggtggaaacggtgcggagatgcccgcgttt
acggctaagctcacaaatccattccctctggttggctctcctgtcatctttgacaagctc
ctgcacaacggcaatcaggactacaatccccaaaatggtgttttcacctgcagcgtaccg
ggggtctactactttgcctaccacgtccactgcaaagggagtaatgtgtgggtggcactg
atgaagaataatgagccggtaatgtacacgtatgacgaatacaaaaagggcttgctggat
caggcgtcggggagcgccgtgctcccgttgcgagagggagacactgtgtatatgcagctg
ccgtctgaccaggccgcgggactttatgctggtcaatatgtccactcgacgttttctgga
tacttactgtacccaatgtaa
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