Cyclopterus lumpus (lumpfish): 117740660
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Entry
117740660 CDS
T09199
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03320
PPAR signaling pathway
clum04148
Efferocytosis
clum04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117740660 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
117740660 (rxraa)
03320 PPAR signaling pathway
117740660 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117740660 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
clum03310
]
117740660 (rxraa)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
117740660 (rxraa)
Nuclear receptors [BR:
clum03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
117740660 (rxraa)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
117740660
NCBI-ProteinID:
XP_034403076
Ensembl:
ENSCLMG00005009579
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All DBs
Position
12:complement(16651035..16737763)
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AA seq
518 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAHPMQRGRSGEACSCFSGMCPLHQRRLSSGNTHRVEAPTLLP
GCWSALGEKYSSGQLTSSPLGSPTSHRGMHPSLLSPTSMGPSGSLHSPISSLSSPMNGLG
SPFSVISSPMGPHSMNSPGMGYGPSVSPQLNSPMHSVSSTEDIKPPLGLNGVMKVPAQPS
GTILSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKHCVIDKRQR
NRCQYCRYQKCLAMGMKREAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQAVEP
KNETYIETNIGAPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAG
WNELLIASFSHRSISIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK
TELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPA
LRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcctgtcattggggttcctgaaaccccagtgctcgttggctcac
cccatgcagcgaggccgctcgggcgaggcgtgttcctgcttcagcggcatgtgtcccctc
caccagcgccgcctgtcctcaggtaacactcatcgcgtggaagcccccacgctgctacct
gggtgctggtcggccctcggggaaaaatactcgtcgggccagctgacctcctcgcccctg
ggctcacccacgtcccaccgggggatgcacccgtctctgctcagcccgacgtccatgggg
ccctcgggctccctccactctcccatcagctcgctgagctcgcccatgaatggccttggc
tcgcccttctccgtcatcagctcgcccatgggtccccactccatgaactcgcccggcatg
ggatacggccccagcgtcagcccccagctgaactccccgatgcactcggtcagcagcacg
gaggacatcaagcccccgctgggcctcaacggcgtgatgaaggtgcccgcccagccctcg
ggcacgatcctgtcgctcaccaagcacatctgtgccatctgcggcgaccgctcctcaggt
aaacactacggggtgtacagctgcgagggctgcaaaggtttcttcaaacggacggtgcgc
aaagacctcacctacacgtgccgcgacagcaagcactgtgtcatcgacaagcgccagagg
aaccgctgccagtactgccgctaccagaagtgtttagccatgggcatgaagagagaagcc
gttcaggaggagcgccagcgagccaaggagaggaacgagaacgaggtggagtccaccagc
tgtgccaacgaggacatgcccgtggagaagattctagaggccgagcaggcggtggaaccc
aaaaacgagacctacatcgagaccaacattggcgcgccatctaattcgcccaacgacccg
gtgacaaatatttgtcaggcggctgacaaacagctcttcaccctggtggaatgggccaag
aggatcccccacttctctgagctgccgctggacgaccaggtcatccttctacgagcaggt
tggaacgaactcctcatcgcatcgttttcgcaccgctcgatatcgatcaaagacggtatc
ctgctggcgaccgggctgcacgtccaccgcaacagcgcccatagcgccggtgtgggagcc
atcttcgacagagtgctcacagagctggtgtcgaagatgagggacatgcagatggataag
acggaactggggtgccttcgagctatcgtcctgttcaacccagactccaaaggtctgtcc
aatccaggtgaggtcgaagctctgagagagaaggtctacgcgtctttagaggcctactgc
aaacagaagtaccccgaccagcccggcaggttcgccaaactgttgctgcggttaccagcg
ctgcgctccatcggcctcaagtgtctggagcacttgttcttcttcaagctcatcggggac
acgcccatcgacaccttcctcatggagatgctagaagccccgcatcaaatgacataa
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