KEGG   Cyclopterus lumpus (lumpfish): 117740664
Entry
117740664         CDS       T09199                                 
Symbol
trim25l
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
  KO
K10652  tripartite motif-containing protein 25 [EC:2.3.2.27]
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:clum00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    117740664 (trim25l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clum04121]
    117740664 (trim25l)
Enzymes [BR:clum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117740664 (trim25l)
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    117740664 (trim25l)
SSDB
Motif
Pfam: PRY zf-C3HC4_4 SPRY zf-RING_UBOX zf-C3HC4 zf-C3HC4_3 zf-B_box zf-C3HC4_2 zf-RING_2 RING_XB3-XBAT31 ANCHR-like_BBOX zf-RING_5 Mer2 Trypan_PARP
Other DBs
NCBI-GeneID: 117740664
NCBI-ProteinID: XP_034403084
LinkDB
Position
2:6891636..6896458
AA seq 814 aa
MSSKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMGCIKDYWSKDNPKGGYSCPQCRKTFS
PKPSLSRNTMLAEAVEQLRKGALKADVRESMRNARSSSGAKGKPSSSSPSYSSPTAVPCD
MCKGEQRAAVKSCLSCMSSYCAAHLKPHSTKKALRAHELIAPTANLAEKICTQHKYLQEF
FCRQCKMFVCWLCTSNQHKGHECVSTKVERLEKQKVLSEMQTENQQRVKVREQELKDMKK
MMEGMKRSADRVHGDTEQALAELQRSMERLQELLEETLDQAGLEKMGQAQEVIDSLEAEV
KELRSRETEMRDLSLCEDNIRYLEACESVCSPLESGDLPAVTVNPDASFEPAREAILDLR
DRVEDLCNQELGKITKQVNDVTLFTLKDSNRSAGPKEGILKLFGLGPRNTSSRPPAAPPS
ISVGARGADRRGIGLKSQDVRSRDAPRADRGNTSSPRLQDRQKREEREPVRETNPRPSPS
PRPSPTPSRKASQSQSLWSRSSQSQAVPANIPTPIPATPTPAPAPASSGGSGFSRMASIS
SLFRSHRRGTTPASPAGNTLSAGGNPWGMAALSETPTEINPGLFLDLPTPVSAMHAPAFP
ALREISLDSIQAPEPRSREEFLQYSVTLTLDTNTAHRRLVLAEGNSKATLQPAAQPYPDN
PQRFDGWTQVMCASPLYAQRCYWEVEWRGRGSSMGVTYGAMARKGTAARSGLGYNAQSWT
LELSDTCCSAMHDNEKRDIPVTYSPRLGLYLDLSTGTLAFYSVAESMTHLHTFRANFTQP
LYAAFGVGSGVGVGLDFALGQFSSSSDSIKICPM
NT seq 2445 nt   +upstreamnt  +downstreamnt
atgagctccaaactgtggaccgaggagcagttcaactgccccgtgtgtctggatctcccg
aacgacccggtcaccatcccctgcggccacagctactgcatgggctgcatcaaggactac
tggagcaaggacaaccccaaggggggctacagctgcccccaatgccgaaagaccttctcc
cccaagccctccctgtccaggaacaccatgctggccgaggcggtggagcagctccgcaaa
ggggccctcaaggccgacgtgcgggaatccatgcggaacgctcgctcctcgtccggagcc
aaagggaagccctcctcctcctccccctcctactcttcgcccacggcggtgccgtgcgac
atgtgcaaaggggagcagcgggcggcggtcaagagctgcctgtcgtgcatgagctcgtac
tgtgcggcccacctgaagccccactccaccaagaaggccctgagggcgcacgagctgatc
gcacccaccgccaacctggcggagaagatctgcacccagcacaagtacctgcaggagttc
ttctgccgccagtgcaagatgttcgtctgctggctttgcaccagcaaccagcacaagggc
cacgagtgcgtgtccaccaaggtcgagcgcctggagaaacagaaagtgctgtcagagatg
cagactgagaatcagcagagggtgaaagtccgcgagcaggagctgaaggacatgaagaag
atgatggagggtatgaagcgttccgccgacagggtgcacggcgacacggagcaggcgctg
gcggagctgcagcgttcgatggagcgtctgcaggagctgctggaggagacgctggaccag
gcgggcctggagaagatgggacaggcccaggaggtcatcgacagcctggaggccgaggtc
aaggagctgaggagcagggagacggagatgagggacctgtcgctctgcgaggacaacatc
cgctacctggaggcatgcgagtcagtgtgcagcccgctggagtcgggcgacctgcccgcc
gtgacggtgaaccccgacgcgtcctttgagcccgcgcgggaagccatcctggacctcagg
gaccgggtggaggacctgtgcaaccaggagctgggcaagatcaccaaacaagtcaacgac
gtcactctgttcacgctgaaagactccaaccggagcgcagggccaaaagaagggatttta
aaattgttcggtctgggccctcgcaacacgagcagccgtcctccagctgctccgcccagc
atctcggtgggagcgcggggcgcggacagacgaggtatcggcctcaagagtcaagatgtg
aggagcagagacgccccgcgagcagacagaggaaacacaagctcacccagactccaagac
cggcagaagagggaggaacgagagccagtgagggagaccaaccctagaccgagtcccagt
cccagacccagccccactcctagccgcaaggcgtctcagtctcagtctctttggagcagg
tccagccagagccaggctgtcccagcaaatatccctactccaattccggccaccccgacc
ccagctccagctccagcatcatccggagggtccggtttcagtcggatggcgtccatcagc
agcctgttccgctcccaccggcgtggcaccaccccggccagcccggccgggaacacgctc
tcagcgggaggaaacccatgggggatggccgctctgtccgaaacaccgacagaaattaac
ccaggcctcttcttggacctgcccaccccggtctcggcgatgcacgcgcccgctttcccc
gcactgagggagatcagcctcgacagcatccaggccccggagccgagaagcagggaggag
ttcctgcagtactcggtgaccttgacccttgacaccaacacggcccaccggcggctggtt
ctcgccgagggcaactccaaggccaccctgcagccggcggcgcagccctaccctgacaac
ccccagcgcttcgacggctggacccaggtgatgtgcgcgagcccgctgtacgcccagcgc
tgctactgggaggtggagtggcgggggcggggctcctcgatgggcgtgacctacggcgcg
atggcgaggaagggcacggctgcccgctcggggctcggctacaacgcccagtcctggacc
ctggagctgtcggacacctgctgctcggccatgcacgacaacgagaagagggacataccg
gtcacctactccccccgcctgggcctctacctggacctgtccacggggacgctggccttc
tacagcgtggcggagagcatgacgcacctgcacaccttccgcgccaacttcacacagccg
ctttacgccgccttcggggtgggcagcggggtcggggtggggctggacttcgccctcgga
cagttcagttccagctccgacagcatcaagatctgtcccatgtga

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