Cyclopterus lumpus (lumpfish): 117740765
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Entry
117740765 CDS
T09199
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117740765 (vldlr)
Membrane trafficking [BR:
clum04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117740765 (vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF_3
EGF
Motif
Other DBs
NCBI-GeneID:
117740765
NCBI-ProteinID:
XP_034403205
Ensembl:
ENSCLMG00005006358
LinkDB
All DBs
Position
12:13617407..13658140
Genome browser
AA seq
864 aa
AA seq
DB search
MVTSAPGILLLPMLICLQHCIHVHGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSD
ENSCVRKTCVEIDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEICHMRTCRVNEFSCGAG
STQCIPNFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASGRCISRNFVCNGEDDCGDGS
DEVECAPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESPSRCGRHPTPPAKCSSSE
MQCHSGECIHKKWRCDGDPDCKDSSDEANCPVRTCGPDQFKCDDGNCILGSRQCNGLRDC
ADGSDEVSCKNMTQCIGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLN
NGGCSHICKDMVISFECDCTPGLQLIDYKTCGDINECLNPGICSQICINLKGGYKCECHN
GYQMDPTTGVCKAVGKEPCLIFTNRRDIRRLGLERKEYTQIVEQQRNTVALDADFNRHML
FWADLGQKAMYSTVLDKRGDVGIHKKVIDNVQTPVGIAVDWIYKNLYWSDLGTKTISVAN
FNGTKQKVLFNKGLKEPASIAVDPLSGFLYWSDWGQPAKIEKSGMNGVDRQVLVATDIQW
PNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSSEYLAHPFALTVFEDRVFWTD
GENKAIYGANKFTGSDVVTLASNLNDPQDIIVYHELIQLSGTNWCVEKAENGGCSYMCLP
APQINKHSPRYTCVCPEGQELAADGHRCKPEHSTKGPSKDDGKASVQPPPEANVSTSIQV
NSTARGSAAAWAILPVLLLVMAAGGGYLMWRNWQLKNQKSMNFDNPVYLKTTEEDLNIDI
TRHGANVGHTYPAISIVSTEDDLS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggttacgtccgctccggggatccttctgctgcccatgctaatatgtctccagcactgc
attcacgtccacggtacgaagacggaatgtgaggccagccagtttcagtgtggaaacggt
cgctgcatcccgtccgtctggcagtgtgacggagacgaggactgcaccgatggcagtgac
gagaactcctgtgttagaaagacttgtgtggagattgactttgtgtgtcgcaacggccaa
tgtgtcccgaaacgatggcactgtgatggggagccagactgcgaggatgggtccgacgag
agcgtagaaatctgccacatgaggacgtgtcgtgtgaacgagtttagctgcggagcgggc
tccactcagtgtatccccaacttctggaaatgtgatggtgagaaggactgtgacaacggc
gaggacgaggtcaactgtggcaacatcacctgtgctccaaatgagttcacgtgcgccagc
ggccgctgcatctcccgcaactttgtgtgtaacggcgaggacgactgtggcgacggctct
gatgaggtggagtgtgcgccgtcctcctgcggtcccagtgagttccagtgtggaaactca
tcgtgcatccccgccagctgggtgtgtgacgacgacgttgactgccaggatcagtcggat
gaatctccgtctcgttgcggccgtcacccgacgccgccagccaagtgttcatccagtgag
atgcagtgccactcaggagagtgtattcacaagaagtggaggtgtgatggagaccccgac
tgcaaggacagcagcgacgaagcaaactgtcctgtacgcacttgtggaccggatcagttc
aaatgtgatgacggaaactgtatcctgggcagcaggcagtgtaacggcctcagagactgc
gccgatggatcagacgaagtcagctgcaaaaacatgactcagtgtatcggaccagagaag
ttcaagtgtcgcagcggggagtgtatcgagatgagcaaagtgtgcaacaaggcccgagac
tgtcctgactggagcgacgaacccatcaaggaatgcaatctaaacgagtgtctcctgaac
aacggcggctgctctcacatctgcaaagacatggtgatcagctttgagtgtgactgcaca
cccggacttcagctcatagactacaagacctgtggagacattaatgagtgtctgaatccc
ggcatttgcagtcagatctgtatcaacctgaagggcggatacaagtgcgaatgccacaac
ggctaccagatggatccgaccaccggagtctgcaaggctgtcggtaaggagccctgcctg
atctttactaaccgacgtgacatccgtcgtctgggtctggagaggaaggagtacacgcag
attgtggagcaacagaggaacacggtggctctggatgcagactttaatcggcatatgctc
ttctgggctgacctgggccagaaggccatgtatagcactgtgctggacaaacgaggagac
gtcggcatccacaagaaagtgatcgacaacgtccagactcccgttggaatcgccgtggac
tggatctataaaaacttgtactggtctgatctcggcaccaaaaccatttctgtagccaac
ttcaacggaaccaagcagaaagtgctcttcaacaaaggcctcaaagaaccggcatccatc
gctgtggatccgctgtctgggtttctgtactggtccgactggggccaaccagccaagatt
gaaaaatctggtatgaacggagtggacagacaggttttggtggcgacggacatccagtgg
cctaatggcatcaccttggatctgatcaaaggcaggttgtactgggttgactcgaagctt
catatgctctgcagcgttgacctgaatggagacaacaggaagaaagtactccagtcttcg
gaatacctggctcatccctttgctctcactgtattcgaggatcgagtcttctggacagat
ggagaaaataaagccatctacggagcaaacaagttcacgggctccgacgtggtgacgctg
gccagcaacctgaatgacccccaggacatcatcgtgtaccacgagctgatccagctgtct
ggcactaactggtgtgtagagaaagctgaaaacggaggctgtagctacatgtgtctgcct
gcaccgcaaatcaacaaacactcccccagatacacctgtgtgtgtccagagggacaggag
ctggctgctgacggccatcgctgcaaacctgaacattctaccaaaggtccctcaaaggat
gatgggaaagcttcggtacagccaccaccagaggcaaacgtgagcacgtcgatccaggtc
aactccacagccagagggtctgctgctgcctgggccatcctaccagtcttgctgctggtg
atggctgcgggtggcggctacctgatgtggcgaaactggcagctaaagaaccagaagagc
atgaactttgacaaccccgtctacctgaagaccacagaagaagacctcaacatcgacatc
acccggcacggcgccaacgtagggcacacctaccctgcgatttcgatagtgagcacagaa
gacgatttatcatga
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