Cyclopterus lumpus (lumpfish): 117740964
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Entry
117740964 CDS
T09199
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117740964 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
clum04990
]
117740964 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
clum04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117740964 (pdlim5b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PilX
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117740964
NCBI-ProteinID:
XP_034403544
Ensembl:
ENSCLMG00005014956
UniProt:
A0A8C2ZR73
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Position
12:complement(9858010..9889357)
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AA seq
609 aa
AA seq
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MSSRYSVSLAGPAPWGFRLQGGKDFCMPLTISRLTDEGKAARAKMSVGDIILSINGISTD
GTNHLEAQNKIKACTGNLSLTLQRPSSAPKDGVPKDEPQEIIKPVPITHPATSTAYTKPS
SQPSPAYNKTARPFGGDSGVITASSPAAPTIPSQSSAFKPAAPSQPPQPPFLLKSSLPAT
DSPPANSVPRPSPARHTFTSPSASSSSSNSSSPARVTAPSSHPNVPQPSVYNTPINLYSN
TNACEAVIGQRRGLLESQGLSEPFNGKPNVILEDHASPLSDANKKCLIDDTEDWNSRTGT
SQSRSFRILAQLTGTENEPAPENSGKIEAVDKAPPTVHTLPAAKTFSKSAASPRNGNIIP
ASTFKSPVAQNKPSFQPGGPPGFPKVGAAPSFGKVTGFPKAPDRPTPQPHPQDLNSVVQR
AEHIPAGTRTPMCNKCNTVIRGPFLVAMGMSWHPEEFNCAHCHSSLAENGFVEERGQVYC
ERCYEQFFAPSCARCQQKILGEVMNALKQTWHVSCFVCVGCQQPIRGNTFHMEDGQPYCE
IDYYKMFGSSCHGCDFPIEAGDKFLDALGAIWHDTCFVCAVCSTSLEGQTFFSKKDKPLC
KKHAHTVAI
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgctacagtgtctccctggctggcccggccccctggggcttcagactgcaa
ggagggaaggatttctgtatgcccctcaccatctcacggctgactgatgaaggcaaagca
gccagagccaagatgagtgttggagacatcattctgtccatcaatggcatttccacagat
ggcacaaatcacctagaggcccagaacaagattaaggcctgcacaggcaatctcagcctc
actctacagagaccctccagtgcccctaaagatggagtacctaaggacgaacctcaagaa
atcattaagcctgtcccaatcactcaccctgccacgagcactgcatacaccaagccatca
agtcagcccagtcctgcatacaacaagacagcccggccttttgggggcgacagcggcgtg
atcacagcttcctccccggctgcccccaccattccctcacagtcatccgctttcaagccc
gctgccccttctcagccaccacagcctccgtttctgctgaagtcgagcctccctgccacg
gactcccctcctgccaactcggttcccaggcccagccctgctcgccacaccttcacttcc
ccgtctgcctcttcctcctcatctaactcctcttctccagctcgagtgacagccccctcc
tcccatcctaatgtcccacagccctccgtctataacacaccgatcaacctctactccaac
accaatgcttgtgaggcggtcatcgggcagagacgcggccttttggaaagccaggggctg
tcggagcccttcaatgggaaacccaatgtgattctcgaggatcatgcatccccactgagc
gatgccaacaagaagtgtctgatcgatgacacagaggactggaactcgcgaaccggcacc
tcccagtcccgctccttccgcatcctggctcagctcaccggcactgaaaatgagcccgct
cctgagaacagtggaaagattgaggcagttgacaaagcccctcctactgtgcacaccttg
cctgcagccaaaacattttccaaatctgcagcttcacccaggaacggcaacatcatcccg
gcttccacgttcaagagcccggtggcccagaacaagccttccttccagcccggaggtcca
ccaggtttcccgaaggttggagcagctccttcattcggcaaggttaccggctttcccaaa
gctccagaccggcccaccccacagccacatccacaggacctcaactctgtggtgcagcgg
gctgagcacatcccagccgggactcgcaccccaatgtgcaacaagtgcaacactgtcatc
aggggcccattcctcgtggccatgggcatgtcgtggcaccccgaggaattcaactgtgct
cactgccactcctccctggcagagaacggcttcgtggaggagagaggccaagtgtactgc
gagcgttgctacgagcagttcttcgcgcccagctgcgcccgctgccagcagaagattctg
ggggaagtcatgaatgccctgaaacagacctggcatgtgtcctgtttcgtctgtgttggc
tgccaacagccaatcagaggcaacacatttcacatggaggatggacagccatactgtgaa
atagactactacaagatgttcgggtccagttgccacggctgtgacttccccatcgaggca
ggggacaagttcctggatgctctgggagccatctggcatgatacctgctttgtgtgtgcg
gtctgctctactagtctggaaggtcagacgttcttctccaaaaaagacaagcctttgtgc
aagaaacatgcccacactgtcgccatctaa
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