KEGG   Cyclopterus lumpus (lumpfish): 117740964
Entry
117740964         CDS       T09199                                 
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b
  KO
K19867  PDZ and LIM domain protein 5/6/7
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117740964 (pdlim5b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:clum04990]
    117740964 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:clum04990]
 LIM domain-containing proteins
  PDZ-LIM family proteins
   117740964 (pdlim5b)
SSDB
Motif
Pfam: LIM PDZ DUF4749 PDZ_6 LIM_FHL2-3_N PilX PDZ_2
Other DBs
NCBI-GeneID: 117740964
NCBI-ProteinID: XP_034403544
Ensembl: ENSCLMG00005014956
UniProt: A0A8C2ZR73
LinkDB
Position
12:complement(9858010..9889357)
AA seq 609 aa
MSSRYSVSLAGPAPWGFRLQGGKDFCMPLTISRLTDEGKAARAKMSVGDIILSINGISTD
GTNHLEAQNKIKACTGNLSLTLQRPSSAPKDGVPKDEPQEIIKPVPITHPATSTAYTKPS
SQPSPAYNKTARPFGGDSGVITASSPAAPTIPSQSSAFKPAAPSQPPQPPFLLKSSLPAT
DSPPANSVPRPSPARHTFTSPSASSSSSNSSSPARVTAPSSHPNVPQPSVYNTPINLYSN
TNACEAVIGQRRGLLESQGLSEPFNGKPNVILEDHASPLSDANKKCLIDDTEDWNSRTGT
SQSRSFRILAQLTGTENEPAPENSGKIEAVDKAPPTVHTLPAAKTFSKSAASPRNGNIIP
ASTFKSPVAQNKPSFQPGGPPGFPKVGAAPSFGKVTGFPKAPDRPTPQPHPQDLNSVVQR
AEHIPAGTRTPMCNKCNTVIRGPFLVAMGMSWHPEEFNCAHCHSSLAENGFVEERGQVYC
ERCYEQFFAPSCARCQQKILGEVMNALKQTWHVSCFVCVGCQQPIRGNTFHMEDGQPYCE
IDYYKMFGSSCHGCDFPIEAGDKFLDALGAIWHDTCFVCAVCSTSLEGQTFFSKKDKPLC
KKHAHTVAI
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgagcagccgctacagtgtctccctggctggcccggccccctggggcttcagactgcaa
ggagggaaggatttctgtatgcccctcaccatctcacggctgactgatgaaggcaaagca
gccagagccaagatgagtgttggagacatcattctgtccatcaatggcatttccacagat
ggcacaaatcacctagaggcccagaacaagattaaggcctgcacaggcaatctcagcctc
actctacagagaccctccagtgcccctaaagatggagtacctaaggacgaacctcaagaa
atcattaagcctgtcccaatcactcaccctgccacgagcactgcatacaccaagccatca
agtcagcccagtcctgcatacaacaagacagcccggccttttgggggcgacagcggcgtg
atcacagcttcctccccggctgcccccaccattccctcacagtcatccgctttcaagccc
gctgccccttctcagccaccacagcctccgtttctgctgaagtcgagcctccctgccacg
gactcccctcctgccaactcggttcccaggcccagccctgctcgccacaccttcacttcc
ccgtctgcctcttcctcctcatctaactcctcttctccagctcgagtgacagccccctcc
tcccatcctaatgtcccacagccctccgtctataacacaccgatcaacctctactccaac
accaatgcttgtgaggcggtcatcgggcagagacgcggccttttggaaagccaggggctg
tcggagcccttcaatgggaaacccaatgtgattctcgaggatcatgcatccccactgagc
gatgccaacaagaagtgtctgatcgatgacacagaggactggaactcgcgaaccggcacc
tcccagtcccgctccttccgcatcctggctcagctcaccggcactgaaaatgagcccgct
cctgagaacagtggaaagattgaggcagttgacaaagcccctcctactgtgcacaccttg
cctgcagccaaaacattttccaaatctgcagcttcacccaggaacggcaacatcatcccg
gcttccacgttcaagagcccggtggcccagaacaagccttccttccagcccggaggtcca
ccaggtttcccgaaggttggagcagctccttcattcggcaaggttaccggctttcccaaa
gctccagaccggcccaccccacagccacatccacaggacctcaactctgtggtgcagcgg
gctgagcacatcccagccgggactcgcaccccaatgtgcaacaagtgcaacactgtcatc
aggggcccattcctcgtggccatgggcatgtcgtggcaccccgaggaattcaactgtgct
cactgccactcctccctggcagagaacggcttcgtggaggagagaggccaagtgtactgc
gagcgttgctacgagcagttcttcgcgcccagctgcgcccgctgccagcagaagattctg
ggggaagtcatgaatgccctgaaacagacctggcatgtgtcctgtttcgtctgtgttggc
tgccaacagccaatcagaggcaacacatttcacatggaggatggacagccatactgtgaa
atagactactacaagatgttcgggtccagttgccacggctgtgacttccccatcgaggca
ggggacaagttcctggatgctctgggagccatctggcatgatacctgctttgtgtgtgcg
gtctgctctactagtctggaaggtcagacgttcttctccaaaaaagacaagcctttgtgc
aagaaacatgcccacactgtcgccatctaa

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