Cyclopterus lumpus (lumpfish): 117741117
Help
Entry
117741117 CDS
T09199
Symbol
farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit isoform X1
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
117741117 (farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
clum01007
]
117741117 (farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clum03016
]
117741117 (farsb)
Enzymes [BR:
clum01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
117741117 (farsb)
Amino acid related enzymes [BR:
clum01007
]
Aminoacyl-tRNA synthetase
Class II (U)
117741117 (farsb)
Transfer RNA biogenesis [BR:
clum03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
117741117 (farsb)
Prokaryotic type
117741117 (farsb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
PhetRS_B1
B5
B3_4
Arc1p_N_like
EAD7
GST_C_6
Glyco_hydro_77
Motif
Other DBs
NCBI-GeneID:
117741117
NCBI-ProteinID:
XP_034403779
Ensembl:
ENSCLMG00005010117
UniProt:
A0A8C2XLT8
LinkDB
All DBs
Position
13:complement(18390500..18400223)
Genome browser
AA seq
712 aa
AA seq
DB search
MPTVGVKRDLLFKALGRTYTDEEFDELCFEFGLELDEITSEKEIISREQGGSKASGASDV
ILYKIDVPANRYDLLCLEGLVRGLQVFKNKLEAPRYRRVAPVSGEPQKLIITKETAAVRP
HAVAAVLRNITFTQERYDSFIELQDKLHQNVCRKRSLVAIGTHDLDTVSGPFTYTAKPPG
DIRFKPLNQTKEYTAAQLMSLYKTDSHLKHFLHIIEDKPAYPVIYDSNGVVLSMPPIING
DHSKISLNTKNVFVECTATDLTKAKIVLDMMVTMFSEYCSQPFTVEEAEVVYPDGKTCKY
PELAYRKEKLSSGFINRKVGINEPTEKIAQLLTKMCLRSEVTGVGDEIQVEIPPTRSDVI
HACDIMEDAAMAYGFNNIPYTTPGTYTVANQFPLNKLTELLRQDLAAAGFTEALTFALCS
KEDISDKLGKKISETRAVHIANPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISD
VVLKDETKDVGARNSRRFCAAYYNKSPGFEVIHGLLDRTMQLLAVKAARGDGYHIQASDD
STFFPGRCAEIFFRGKSVGRLGVLHPDVLGRFELAMPCSALEMDVEPFLGRTAETALAHE
VAAAAAVHRPPPARPASTRTVFGDVSAPAGLRALDDFLADKSYVEGFEATQADAAVFDAL
PAAPGPALRHLARWYNHIESFRRERGGLPAAKGRFVLDAFEEHVDVDAFNKI
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccgtcggagtgaaaagggatcttctcttcaaagctttgggcagaacatacacc
gacgaggagtttgacgagctgtgctttgaatttgggctcgagctggatgaaattacctcg
gagaaggagataatcagccgagagcaggggggctccaaggcgtcgggggcgtctgacgtc
atcctgtacaagatcgacgtcccggcgaaccgctacgacctgctgtgtctggaggggctg
gtccgtggactgcaggtcttcaagaacaagttggaggcacctcgctacagacgcgtcgcc
ccggtcagcggggagcctcagaagctgattattaccaaagagacggcggcggtgcgaccc
cacgccgtggcggcggtgttgaggaacatcaccttcacacaggagcgctacgacagcttc
atcgagctgcaggataaactccaccagaacgtctgcaggaagaggagcctggtggccatc
gggactcacgacctggacaccgtctccggtcctttcacgtacacggccaaacccccggga
gacatccgcttcaaacccctcaaccagaccaaggagtacaccgccgcccagctcatgagc
ctctacaagacggacagccacctgaagcatttccttcacatcattgaggacaagcccgcg
taccccgtcatctacgacagcaacggcgttgtgctgtccatgcctcccatcatcaacggc
gaccactcaaagatctcgttaaatacgaagaacgtctttgtcgagtgcacggccaccgac
ctgaccaaggcgaagatcgtgctggacatgatggtgaccatgttcagcgagtattgctcg
cagccgttcacggttgaggaggcggaggtggtgtacccagacggcaagacctgcaaatac
ccagagctggcttacaggaaggagaagttgtccagcgggttcatcaaccggaaagttggc
atcaacgagccgacggagaagatcgcccagctgctcaccaagatgtgcctccgctccgag
gtcacgggggtcggcgacgagatccaagtggagatcccgcccacgcgctccgacgtcatc
cacgcctgcgacatcatggaggacgccgccatggcctacgggttcaacaacatcccgtac
accacgccgggcacctacaccgtcgccaaccagttcccactgaataaactgacagagctg
ctgagacaagacctggcagctgccggcttcacggaggccctcaccttcgccctatgttct
aaagaagatatctccgacaagcttggaaagaagatttcagagaccagagcggttcatatc
gcaaaccccaagacagcggagttccaggtggcgcgcaccaccttgctgcccggcctgctg
aagaccatcgcggccaaccggaagatgcccctccccctcaagctgtttgagatatccgac
gtggtcctgaaggacgagaccaaagacgtcggggcgaggaacagccggcgtttctgcgcc
gcctactacaacaagagccccggcttcgaggtgatccacggcctgctggaccgcaccatg
cagctgctggccgtgaaggcggcccgcggggacgggtaccacatccaggcctcggacgat
tccaccttttttcccggtcgctgcgccgagatcttcttccgcgggaagagcgtcgggcgc
ctcggggtcctccacccggacgtcctcggccgcttcgagctcgccatgccctgctcggcc
ctggagatggacgtcgagcccttccttggccgcactgcagaaaccgccctcgcgcacgaa
gtcgccgccgccgccgccgtgcacaggccgccgcccgcccgcccggcttccacgcggacc
gttttcggggacgtgagcgcgccggccggcctgagggcgctcgacgacttcctggcggac
aaaagctacgtggagggcttcgaggcgacccaggcggacgcggcggtgttcgacgccctg
cccgccgctccgggccccgccctccgccacctcgcgcgctggtacaaccacatcgagtcc
ttccggagggagaggggcggcctcccggcggcgaagggtcgcttcgtcctcgacgccttc
gaggagcacgtggacgtggacgccttcaacaagatctga
DBGET
integrated database retrieval system
