Cyclopterus lumpus (lumpfish): 117741204
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Entry
117741204 CDS
T09199
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117741204 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117741204 (supt5h)
03019 Messenger RNA biogenesis [BR:
clum03019
]
117741204 (supt5h)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117741204 (supt5h)
RNA polymerase I system
117741204 (supt5h)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
117741204 (supt5h)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
RimP_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
117741204
NCBI-ProteinID:
XP_034403948
Ensembl:
ENSCLMG00005005159
LinkDB
All DBs
Position
13:complement(20186664..20209276)
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNPSERSSDGEAEEGNEEETGSPVGSDKVAEEEGEDLEEEEYDEEEEEDD
DDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKEEAEVSNIDHLAQDEDHSG
SRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFSGGSEELSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKSAIEG
IGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQN
TISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPTQRLFDAEKIRSLGGEVSHDGDFMIF
EGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHNLQA
GDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIA
GRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQL
DPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKV
IDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGF
APMSPRISSPMHHGGGSSPQRGGGAGGGGGGGGMGRGRGRRDNELIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRPSGMTSAHGRTPMYGSQTPMYGT
GSRTPMYGSQTPVQEAGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNEEEYDFG
YDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQ
GSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS
PGGYNPHTPGSNIEQGGSDWVTTDILVKVKDSFMDLMGQTGVIRSVTGGMCSVFMQESEK
VVSISSDHLEPITPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GRLDH
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcgaggacagcgacttctccgacaacccgagtgagcgcagcagcgacggg
gaggccgaggagggcaacgaggaggagacgggcagcccggtgggcagcgacaaggtagcc
gaggaggagggggaggacctggaggaggaggagtacgacgaggaggaagaggaggacgac
gatgaccgtcccaggaagaagccgaggcacggcgggttcatcctggacgaagccgacgtg
gacgacgagtacgaggatgaggaagatcagtgggaggaaggagctgaggacattctggag
aaagaggaggcagaagtgtccaacatcgaccacttggcccaggatgaagaccactccggg
tccagacggctgcagaacctctggagagactccagagaggaggcgctgggtgaatactac
atgaggaaatacgccaagtcctcaggaggagagcatttctccggagggtccgaggagctc
tctgatgacatcacccagcagcagctacttcctggggtcaaggaccccaacctgtggacg
gtgaagtgtaagatcggggaggagagggcgacggccatcgccctgatgaggaagttcatc
gcctaccagttcaccgacacgcctctgcagatcaagtccgtcgtggcccccgaccacgtc
aaaggttacatctacgtggagtcgtacaagcagacgcacgtcaagtcggccatcgagggc
atcggcaacctgaggatgggcctgtggaaccagcagatggtccccatcaaggagatgacg
gacgtcctcaaggtcgtcaaagaggtcaccaacctgaagcccaagtcctgggtccggctg
aagaggggcctgtacaaggacgacatcgctcaggtggactacgtggagccgagtcagaac
accatctctctgaagatgatccctcgtatcgacctggaccgcatcaaggccaagatgagt
ctgaaagactggttcgctaagaggaagaagttcaagcgaccgactcagcgtttgtttgat
gctgaaaaaatccggtccctgggaggagaagtcagccacgatggagacttcatgatcttt
gaggggaaccgttacagccgcaaagggttcctgttcaagagcttcgccatgtcggctgtg
atcaccgacggagtgaagccgacgctgtcggagctggaaaagtttgaggaccagccggaa
ggaatcgacctggaggtggtcaccgagtcaggtaaggagcgcgaacacaacctgcaggcc
ggtgacaacgtggaggtgtgtgagggagagttgatcaacctgcaggggaagatcctcagc
gtggacggcaacaagatcaccatcatgcccaagcacgaggacctgaaggaccctctggag
ttcccggctcacgagttgaggaagtacttccggatgggcgaccacgtgaaggtgatcgcc
ggccgctacgagggcgacaccggcctcatcgtcagggtggaggagaactttgtcatcctg
ttctcggacctcaccatgcacgagctgaaggttttgcccagagacctgcagctctgctcg
gagacggcgtccggcgtggacgcgggggggcagcacgagtggggggagctggtccagctg
gaccctcagaccgtgggggtcatcgtgcgcctggagagggagacgttccaggtgctgaac
atgcacgggaaggtcatgacggtgcggcaccaggcggtgaaccgcaggaaggacaaccgc
ttcgccgtggcactggactctgagcagaacaacatccacgtcaaggacatcgtcaaggtc
atcgacgggccgcactcgggccgtgaaggggagatccgtcacttgttccgaggcttcgcc
ttcctgcactgcaagaagctggtggagaatggaggcatgttcgtctgcaagacccgacac
ctggtcctggctggggggtccaagcctcgagacgtgaccaacttcacggtgggggggttc
gctcccatgagccctcggatcagcagccccatgcaccacgggggaggaagttctccacag
agaggaggaggagccgggggaggaggtggtggtggaggaatgggccggggcagaggacga
agagacaacgagctgattggtcagacggtccgcatctcccagggtccttacaaagggtac
attggggtggtgaaggacgccaccgagtcgacggccagggtggagctgcactccacctgc
cagaccatctctgtggaccgacagcgcttaaccaccatgggggctaagagacccagcggc
atgacctccgcccacggccgtacgcccatgtacggctctcagacgccgatgtacggcacc
ggctccagaacgccgatgtacggctctcagacgccggttcaagaagccggaagccggacg
cctcactacggctctcagaccccattgcatgatgggagcaggacgccggggcagagtgga
gcctgggaccccagcaaccccaacacaccttccaggaacgaagaggaatacgacttcggc
tacgacgacgagccctccccgtcccctcagggctacggggggacccccaacccccagacc
ccgggctacccagaagtcccgtctccgcaggtcaaccctcagtacaacccgcagacgccc
ggcacgcccgctatgtacaacacagagcagtattccccctatgcggccccgtcccctcag
ggctcctaccagcccagtcccagtcctcagagctaccaccaggtggcgccctcaccggtc
ggataccagaacacgcactctccagccagctaccaccccacaccgtcccccatggcctac
caggccagtcctagtcccagtccggtgggctacagtcccatgacccccggagccccctct
cctgggggctacaacccccacacccccggctccaacatcgagcagggcggcagcgactgg
gtgaccaccgacatcctggtcaaggtgaaggactccttcatggacctgatggggcagacg
ggggtcatcaggagtgtcacgggagggatgtgttcagtgttcatgcaggagtctgagaag
gtggtgagcatcagcagcgaccacctggagcccatcacgcccaccaagaacaacaaggtg
aaggtgatcctcggggaggaccgcgaggccaccggcatcctgctgagcatagacggcgac
gacggcatcgtccgcatggagctggacgaccagctgaagatcctgaacctgaggttcctg
ggacgcctggaccactga
DBGET
integrated database retrieval system
