Cyclopterus lumpus (lumpfish): 117741206
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Entry
117741206 CDS
T09199
Symbol
dhx36
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117741206 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117741206 (dhx36)
03012 Translation factors [BR:
clum03012
]
117741206 (dhx36)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117741206 (dhx36)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117741206 (dhx36)
Translation factors [BR:
clum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117741206 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
PhoH
ATPase
HerA_C
Motif
Other DBs
NCBI-GeneID:
117741206
NCBI-ProteinID:
XP_034403953
Ensembl:
ENSCLMG00005001870
LinkDB
All DBs
Position
13:complement(6247454..6269499)
Genome browser
AA seq
1073 aa
AA seq
DB search
MSYGHGGRGGRRGTRGGRGYRDGSRDRRDRGGGVGSSGQRSELDQDQGGGGQRDRPPPHL
KGREIGLWYARYGVVRRKQGDRRSRAVVQMDESREQHITKLLSSVQNDFPVPGRDARAST
SNSWQAGANSSGHCYFDGEMSEEEKLKIELKSEEEEEEVTSGQKKASHKSQRYFSPAVVK
DEPPDTWDEEDQHQQQQQQQQQEKEKETLRMKDKDLEFLIQEIARDSSLDDRLKRDLQSK
KSDPKYKENLKFREKLPSYAKQEELVELINSNRVLVVSGETGCGKTTQVTQFILDDYINR
GVGSMCRVVCTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRRQGSVLYCT
TGIILQWLRTDPLLSSISHLVLDEIHERNLQSDVLLVIVKDILAIRDDLKIILMSATLNA
EKFSKYFDNCEMIHIPGLTFPVEEFLLEDVVELTRYRCQNLDRRPSRKRGFWQGSNSRPE
KEAKEAEYKENWPSYARTLQGRYSDNTIETLEMXDNDEKIDLELIVTLIRHIVLKEEDGA
ILVFLPGWDNISGLNDLLVAQQMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIA
TNIAETSITIEDVVYVIDGGKIKETNFDTSNNISTMTAEWVSLANAKQRKGRAGRYCVPG
KCYHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILNLGSIAAFLENPWTLPLQNAINL
AIKNLVDLNALDRSENLTALGFHLARLPVQPHIGKLILFGALLGSLDPVLTIAASLSFKD
PFFIPLVGXEKMADMRRRTLSRNSKSDHLTIVNAFQGWEEAKHRGARYEREYCWDNFLSA
NTLQMLHNMKGQFAEHLMHTGXVSSRDPKDPTSNVNSDNEKLIKAVIVAGLYPKVATIRP
SGSKKRPGVKAYTQADGKVCIHPKSVNAEETDFNYSWLIYHLKMRTSSIFLYDCTEVSPF
SLLFFGGDITIQKDEDQETIAVDQWIVFRSPARIAHLVKSLKKALDSLLEEKIRKPAPVD
WQNRQSKDCAVITAIIDLITTQEKPTGGTRGYGNTWASAPRGQHKHFNDDDDD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggacatggtggtcgaggagggagaagaggcacaagaggaggtcgaggatat
agagatggaagcagagaccgacgggacagaggaggtggagtaggttcgagtggacaacgt
tccgaattggaccaggaccaaggaggaggtggacaacgggaccgtcctcctcctcacctg
aagggacgtgagattggcctgtggtacgcaagatacggagtcgtgaggaggaagcagggt
gaccggagatcgcgggcggtcgtccagatggatgagtccagagaacagcatattaccaag
ctgcttagctctgtccaaaatgatttccctgttccggggagggatgcaagagcttctacg
tctaacagctggcaggcaggtgcaaatagcagtggtcattgctacttcgatggggaaatg
tctgaagaggaaaaactgaagattgagctcaaatctgaggaagaggaggaagaagttact
tcaggccagaagaaagcaagtcacaaatcgcaacgttacttctcccctgcagtcgttaaa
gatgagcctccagacacgtgggatgaagaagatcagcatcagcagcagcagcagcagcag
cagcaggagaaggagaaggagacactgagaatgaaagacaaggacctggagtttttaatc
caggaaatagcaagagacagttcacttgatgaccgcttaaagagagatctgcagagcaag
aaatcagatccaaagtacaaagaaaatttaaaattcagagaaaaactaccatcttatgcc
aaacaagaggagctggttgagctaatcaactcaaaccgtgtcctggtggtgagtggggaa
acagggtgtggaaagaccactcaggttacccagttcatcctcgatgactacatcaataga
ggcgtgggctctatgtgtcgtgtggtctgcacgcagcctcgtcgcatcagtgccatctcg
gtagcagagcgtgtagcagcagagagggcagaaagtgtaggaaatggaaattcttgtggt
taccaaatccgcctgcagagccggttgccacggagacaaggttcggttctgtactgtaca
acaggcattattcttcagtggctgcgtacagacccattattgtccagcatcagccacctg
gtgttggacgagatccacgaaaggaacctgcaatctgacgttttgctcgtgattgtgaag
gacatactcgccattcgagatgacctcaagatcatcctcatgagtgccacgctcaacgca
gagaagttttctaaatattttgacaactgtgaaatgattcacatccctggcttgacattc
ccagttgaggagttcctactggaggacgttgtggagttaaccaggtatcgttgccagaat
ctggaccgtcgcccctcaaggaagagaggcttttggcaggggagcaactccaggcctgag
aaggaggcgaaagaggctgaatacaaggagaattggcccagttatgcacgcacactgcag
ggcagatactccgacaacaccattgagacactggagatgnttgacaatgacgagaagatt
gacctggagctgatcgtgacactgattcgccatattgtactcaaggaggaggatggagca
atcttggtgttccttcctggctgggacaacatcagcggtctcaacgacctgctcgtggct
cagcagatgttccgatcagaccggttcgttatcatccctttgcactctctcatgcccacc
gttaatcagacgcaggtgttcaaaaggcctcctcctggagttagaaagattgtgattgct
accaatatagctgagaccagcatcactatagaggacgttgtatatgtgatagatggaggc
aagattaaggagaccaactttgacaccagcaataacattagcaccatgacagcggagtgg
gtcagcctggccaatgccaaacagaggaaaggacgtgctggcaggtattgtgtcccagga
aagtgctatcatctgtacaatggtctcagggccagcctgctggatgcttatcaattacct
gaaatcatgaggacaccactggaggagctctgcctgcaaatcaagattttgaatcttggg
tctatagctgcattcctggagaatccctggaccctcccactacaaaacgccatcaaccta
gccatcaagaaccttgtagacctgaacgccctggaccgctcagagaatctgaccgcgctg
ggtttccatctggctcgcctccctgtgcagcctcacattggcaaactcattctgtttgga
gctctgttgggatccctcgaccccgtactcaccattgctgcatcactcagcttcaaagac
cctttcttcatacccctggtagggtaagagaagatggcagacatgaggagaaggaccctg
tccagaaactccaagagtgaccacctcactattgtcaatgccttccagggctgggaggaa
gcaaaacaccgtggcgccaggtatgaaagggagtactgttgggacaacttcctgtctgcc
aatacactccagatgctgcacaatatgaagggtcagtttgctgagcatctaatgcataca
ggcnttgtcagtagcagggaccccaaagaccccacatccaatgtcaactcagacaatgag
aagttgatcaaagcggtgattgtagctggtctgtacccgaaggtggccacgatccgacca
tctggcagcaagaagaggcctggggttaaggcgtacacccaagctgatggaaaggtgtgt
atccacccgaaatcagtcaatgcggaagagactgacttcaactattcatggctcatctac
cacctcaaaatgagaacaagcagtatcttcctctacgattgcaccgaggtatccccgttc
tctctgctgttctttggaggagacataacaatccagaaagatgaggaccaggagaccatc
gccgtggaccagtggatcgtcttcagatccccggcacgcatagctcatcttgtcaaaagc
ttaaagaaagcgctggattctctgcttgaggagaagatccgtaagcctgctcccgtagac
tggcaaaatcgtcagtccaaagactgtgccgtcatcacagccatcatagacctcattacc
acccaggagaaacctacaggcggcactaggggctatggcaacacgtgggcatctgcccca
agaggacaacacaaacacttcaatgacgatgatgacgattag
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