Cyclopterus lumpus (lumpfish): 117741208
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Entry
117741208 CDS
T09199
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117741208 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117741208 (prpf8)
Spliceosome [BR:
clum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117741208 (prpf8)
Complex C
U5 SnRNP specific factors
117741208 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117741208
NCBI-ProteinID:
XP_034403957
Ensembl:
ENSCLMG00005007991
LinkDB
All DBs
Position
13:complement(2951680..2967349)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPVGMPPGVPPPVPVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDSEEDSSVREWLYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYAEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaccttcccctacagaggggtccctgtagggatgcccccaggtgtacctcct
cctgtgcctgtcccggattacatgtctgaagaaaaactgcaagagaaggcaagaaaatgg
cagcacttgcaggcaaagcgctactcagaaaagagaaagtttggctttgtagatgcacag
aaggaagacatgccacctgaacatgttcgcaagatcatcagggaccatggagacatgact
aatagaaagtttcgccatgacaagagggtgtacctcggtgccctcaagtacatgccccat
gctgtactgaagctgctggaaaacatgcctatgccctgggaacagatcagagatgtgccc
gtcctctaccacatcactggagctatttcttttgtgaatgaaattccctgggtcatcgaa
ccagtctacatcgcccagtggggcaccatgtggatcatgatgcgacgtgagaagcgtgat
cgtcggcacttcaagcggatgcgctttccaccatttgatgatgaggagccgccgctggac
tatgctgacaacatccttgatgtggaaccactggaggcaatccagatggagctggactct
gaggaggactcttcagttagagagtggctctatgagcaccaacccctcaaagacactgcc
aagtttgtaaatggcaccacctaccgtcgctggcagttcacgctgcccatgatgtccaca
ctataccgcctggccaatcagctgctcacggacctggtggatttcaattacttctatctg
tttgacctcaaggccttcttcacttccaaggccttgaatatggccatccctgggggaccg
aagtttgagccactggttagggacatcaacctccaggacgaagactggaatgagttcaat
gacatcaacaagatcattatccgacagcctatcaggacagagtacaaaatcgccttcccc
tacctgtacaacaacttgccgcaccatgtccacctaacctggtatcatacacccaatgtg
gtgtttatcaagacagaggatccagatctcccagcattctacttcgatccgcttatcaac
cccatttcacacagacattctgtcaagagtcaggagcctctgcctgatgacgatgaggag
tttgagcttcctgagtatgcagagcctttcctcaaggagaccccactctacacagacaac
actgccaatggcatcgctctgctgtgggccccgagacccttcaacctccgatctgggcgc
acaaggcgtgccatagatatccccctgatcaagaactggtaccgtgagcactgccctgca
ggacagccagtgaaagtgcgcgtgtcataccagaaactgctgaagtactatgtgctcaat
gctcttaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccacaaagttctttcagtccaccaagctggactgggtggaggtgggactgcaggtttgc
cgacagggttacaacatgctcaatctgcttatccaccgtaagaacctcaactacctgcat
ctcgactacaacttcaacctgaagcctgtcaagacactgaccacaaaggaaagaaagaag
tcccgattcggtaacgcctttcacttgtgcagagaggtgctgcgtctcagcaaactggtg
gtggacagccatgtgcagtacagactgggaaacgttgatgctttccagttgtctgatggg
ctgcagtacatctttgcccatgtgggtcagctgacaggcatgtaccgctacaagtacaag
ttgatgagacaaatccggatgtgcaaagatctgaagcatctcatctactatcggtttaac
actggtcctgtgggcaaaggtccaggttgtggcttctgggccccaggctggagagtgtgg
ctgttcttcatgaggggaatcactccactgttggagaggtggctgggaaatctgctcgcc
aggcagtttgaaggacgtcactccaagggcgtagccaagactgtgaccaaacagcgtgtg
gagtctcactttgacctggagttgcgtgccgctgtgatgcatgacatcttggacatgatg
cccgagggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcttgg
cggtgctggaaggccaacatcccctggaaggtgccaggcctgcccactcccatcgagaac
atgatcctgcgctacgtgaaggctaaagctgactggtggaccaacactgcccactacaac
cgtgagcgaatccgccgtggagccactgtggacaagacagtgtgcaagaagaacctgggg
aggctgactcgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggcccctacatcacagctgaagaggcagtagccatttacaccaccactgttcattggctg
gagagtcggcggttctcgcccatccctttccctccactatcctacaaacatgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcgtatagtgtgaagtctcgtctgaac
cagagtcagagggaggagcttgggctgattgagcaggcttacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacccagagagcatttaaagaggtgggtattgag
ttcatggacttgtacagtcacctggtgccagtgtatgatgtagagccccttgagaagatc
accgatgcctaccttgatcagtacctgtggtatgaggcggacaagagacgcctcttccca
ccctggatcaaacctgctgacactgaaccaccaccactcctggtgtacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagaccacagagggagagtgcaacgtgatgctg
gagtcccgctatgagaagatgtatgagaagatagatctgactctgctcaacaggctgctg
cgtctcattgttgaccacaacattgctgattacatgacagccaagaacaacgtggtcatc
aactacaaggatatgaaccacaccaactcctacggcatcatcagggggctccagttcgcc
tcgttcattgtacagtactacggcctggtgatggacctactggtgctgggcctgcaccgt
gccagtgagatggccggcccacctcaaatgcccaatgacttcctcagtttccaagacaca
cccacggagagtgcccacccaatcagattatactgccgctacattgaccgcatccacatc
ttcttcaggttctctgctgatgaggccagagatctgattcagaggtacctgacagagcac
ccagaccccaacaatgagaacatagtgggttataacaacaagaagtgctggccccgcgat
gcccgcatgagactgatgaagcacgatgtcaacctaggacgtgcagtgttctgggacatc
aagaaccgcctgcccagatcagtgactactgtccagtgggagaacagctttgtttcagtc
tacagcaaagacaaccccaacctgctcttcaacatgtgtggctttgagtgccgcatcttg
ccaaagtgccgcaccagctatgaggagtttactcacaaggatggtgtgtggaacctccag
aatgaggtaaccaaagagaggacggcgcagtgtttcctgcgtgtggatgatgaatcaatg
cagcgcttccacaacagagtccgtcagatcctgatggcctctggatccaccacattcact
aagattgtgaacaaatggaacacggccttgatcggtctaatgacatacttccgtgaggct
gtggtcaacacccaggagctcctagacctgctggtgaagtgtgagaacaagatccagacg
cgtatcaagatcggcctgaattctaaaatgcctagccgcttcccacctgtcgtcttctac
actcccaaagagttgggtggccttggcatgctgtcaatgggtcacgtgcttattccacag
tcggaccttcggtggtcaaagcagacagatgtgggaatcacccatttcaggtcaggaatg
agccatgaggaagatcagctgattcccaacttgtatcgttacattcagccatgggagagt
gagttcatcgactcccagagggtttgggccgagtatgccctcaagagacaggaggccatc
gcccagaacaggcgtctgaccctggaagatttggaggactcttgggacagaggaatcccc
cgtatcaacacacttttccagaaggacagacacacactggcctatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatccgttctggtggactcac
caaaggcacgatggcaaactgtggaacctgaacaactatcgcacagacatgatccaggct
ctgggtggagtggagggcatcctggaacacacactcttcaaaggcacttactttcccacc
tgggagggtctcttctgggaaaaggccagtggctttgaggagtccatgaaatggaagaag
ttgaccaatgcccagcgttctggtctgaaccaaatcccaaaccgtcgcttcacactttgg
tggtcacccaccatcaacagagctaacgtgtatgtgggtttccaggtgcaacttgacttg
acaggaatctttatgcacggcaagatcccaacactgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcacgagagcgtggttatggatctctgtcaggtgttt
gatcaagagctggatgctctcgagattgagactgtgcagaaggaaaccatccaccccagg
aagtcgtacaagatgaactcctcctgtgcagacatcctcctctttgcatcatacaagtgg
aacgtctctagaccatctctgctggcagactcaaaggacgtgatggacagcaccaccaca
cagaagtactggattgacatccagctgcgttggggtgactatgactcgcatgacatcgag
cgctatgccagggccaagttcctggactacaccactgacaacatgagtatctacccctcg
cccaccggggtgctcattgccatcgacttggcttacaacctccacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
cctgccctgtatgtgctcagggagcgcatccggaaaggtctgcagctgtactcctccgag
cccactgagccctacctgtcctcccagaactatggtgaactcttctccaaccagatcatc
tggtttgtagatgacaccaacgtgtacagagtcaccatccacaagacctttgagggtaac
ttgaccacgaagcccatcaatggagccattttcatcttcaaccccaggactggtcagctt
tttcttaagatcattcacacatctgtgtgggccggacagaaacgtctgggacagctggcc
aaatggaagacagctgaagaagtggcggccctgattcgctccctgcccgtggaggagcag
cccaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacatcgtgatcaaaggttctgagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctgatcctgaaggctacagagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcgtacacagccttttctcgactcatc
ctgatcctcagagcgctccacgtcaacaatgaccgcgccaaagtgatcctgaaacctgac
aagaccacgatcacagagcctcatcacatctggcccacgctcactgacgaggagtggatc
aaggtggaagtgcaactcaaagatctcattcttgcagattacggcaaaaagaacaatgtg
aacgtggcctcgctgacacagtctgagatccgtgacatcatcctgggtatggagatctct
gctccgtcacagcagcgccagcagatcgctgagattgagaagcagaccaaagagcagtcg
cagctcactgccacgcagacccgcactgtcaacaagcacggtgatgagattatcacctcc
accacctccaactatgagacccagaccttctcctctaagactgaatggagagtcagggcc
atatcggctgccaacctccacctccgaacgaaccacatctatgtgtcatctgacgacatc
aaggagacgggctacacctacattctgcccaagaacgtcctcaagaagttcatctgcatc
tcagatctgcgagcacagattgcaggctacctgtatggcaccagtccaccagacaacccc
caggtgaaggagattcgttgtattgtcatggtgccacagtgggggacacaccagactgtc
cacctgcccaaccagcttcctggtcatgaataccttaaagaaatggagcccctcggctgg
atacatacccagcctaatgagtcgccccagctgtctccacaggacgtcaccacccatgcc
aaggtcatggctgacaacccttcttgggacggagagaagaccatcatcattacttgcagc
ttcaccccgggctcgtgcactcttacagcctacaagctgacacctagtggttatgagtgg
ggccggcagaacacggacaagggcaacaaccctaaaggctacttgccatcccactatgaa
agggtgcagatgctgctctctgatcgcttcctgggcttcttcatggtccctgggcaggtg
tcctggaactacaacttcatgggtgttcgccatgaccccaacatgaagtacgacctgcag
ctggccaacccgaaggagttctaccatgaagtccaccggccctcgcacttcctaaacttt
gcctcactgcaggagggtgagatctataatgcggaccgtgaggacatgtatgcctga
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integrated database retrieval system
