Cyclopterus lumpus (lumpfish): 117741246
Help
Entry
117741246 CDS
T09199
Symbol
rabgef1l
Name
(RefSeq) RAB guanine nucleotide exchange factor (GEF) 1, like
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117741246 (rabgef1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117741246 (rabgef1l)
Membrane trafficking [BR:
clum04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117741246 (rabgef1l)
Protein recycling
Other Rab GTPase associated proteins
117741246 (rabgef1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
CID_GANP
LRRFIP
Motif
Other DBs
NCBI-GeneID:
117741246
NCBI-ProteinID:
XP_034404039
Ensembl:
ENSCLMG00005016244
UniProt:
A0A8C2ZX66
LinkDB
All DBs
Position
13:5620860..5627369
Genome browser
AA seq
504 aa
AA seq
DB search
MMSQRRGIHLDQSELLCKKGCGFYGNTGCQGLCSKCWREENQREKQTQIQEDWALAERLQ
REEQEAYASRHPKAQPQPSITPFSKFEERKTKEKSSKVNTVTKFFSASTKTPSKKGAPFE
AQSSPSSSSSSASRRSSVDSDHATREFIDFLKPLKSGREVFKQCRAFTESMVYKRDMGAD
EQSECVQDFYQNLSDRLHTQFKGSSEHVESVMDEVEKYMMTRLYKEVFCPETTDDEKKDL
AIQKRIRALHWVTIEMLCVPVDEEIAEVSDSVVKSITDVIEMDSKCVPKEKLACITRCSK
HIFNAIKISKKEAASADDFLPTLIYIVLKANPPRLQSNIQYITRFSNPSRLMTGEDGYYF
TNLCCAVAFIEKLDGQSLNLSSEEFERYMSGQASPQSPQSTGASSCPPGSTTQVHQRLDL
LAGLGERQEQVMVKARQLESDLIDWTDEVEQKVQSVLESFPPETQNPTAIEASGTTSAAA
SAIDSDNVENEHLPPPLLPQVFAG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatgagccagcggcgtgggatccatctggaccaatcagagctgctttgcaaaaaagga
tgtggtttttatggcaacaccggctgccagggcctgtgctccaagtgctggcgagaggag
aatcagcgagagaagcaaacccagattcaagaggactgggcacttgctgagaggctgcag
agagaggaacaggaagcctatgcaagcagacacccgaaggcccaaccgcagcccagcatc
acacccttcagcaagtttgaggaaagaaaaactaaggaaaagtccagcaaagtcaacaca
gtcacaaagttttttagtgcttccacaaaaacaccatcaaaaaaaggtgctccttttgag
gctcagtccagcccgagctccagctcctcctctgccagccggcgctcctctgtggacagt
gaccatgcaacgcgagagttcattgactttctcaagcccctgaagtccggcagggaggtc
ttcaaacagtgccgagccttcactgagagcatggtctataagcgggacatgggtgctgat
gaacagtctgagtgtgtacaggacttctaccagaatctctcagaccgcctccacacccag
ttcaaaggttcgtcagaacatgtggagagtgttatggatgaagtagaaaagtacatgatg
actcggctctacaaggaggtcttctgtcccgagacaacagatgatgagaagaaagaccta
gctattcagaagagaatcagagccttgcattgggtcaccattgagatgctgtgtgttcct
gtcgacgaggagatcgctgaggtgtcagacagtgtagtcaaatccatcacagacgtgatt
gaaatggattcaaagtgcgtgcccaaggagaagctggcgtgcatcactcgttgcagcaag
cacatcttcaacgccatcaaaatcagcaaaaaagaggctgcatctgcagatgacttcctc
ccgacgctcatctacattgtgctgaaagcaaacccgccgcgcttgcagtccaacatccag
tacatcacccgcttcagcaaccccagccgactcatgactggagaggatggctactacttc
actaatctgtgctgtgcagtggccttcatagagaagctggacggtcagtctctgaacctg
agctcggaggagtttgagcgctacatgtcgggccaggcatccccccaatcgccacagtcc
actggagcttcttcctgccccccaggcagcacgactcaggtccaccaacggctggacctg
ctagcagggctcggggaaagacaggagcaggtcatggtgaaagctcgccagctggagagc
gatctcatagactggacggacgaggtggagcagaaggtgcagagcgttctggagagcttt
cctccagagacgcaaaacccaactgcaatcgaggccagcgggacgacttctgcagcggca
tcagcaatcgactccgataacgttgagaacgagcacctgcccccacctctgctaccgcaa
gtgtttgctggttga
DBGET
integrated database retrieval system
