Cyclopterus lumpus (lumpfish): 117741412
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Entry
117741412 CDS
T09199
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03030
DNA replication
clum03420
Nucleotide excision repair
clum03430
Mismatch repair
clum03440
Homologous recombination
clum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117741412 (rpa1)
03420 Nucleotide excision repair
117741412 (rpa1)
03430 Mismatch repair
117741412 (rpa1)
03440 Homologous recombination
117741412 (rpa1)
03460 Fanconi anemia pathway
117741412 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117741412 (rpa1)
03032 DNA replication proteins [BR:
clum03032
]
117741412 (rpa1)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117741412 (rpa1)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117741412 (rpa1)
DNA replication proteins [BR:
clum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117741412 (rpa1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117741412 (rpa1)
MMR (mismatch excision repair)
117741412 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117741412 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Pox_vIL-18BP
RADX
DUF223
Motif
Other DBs
NCBI-GeneID:
117741412
NCBI-ProteinID:
XP_034404337
Ensembl:
ENSCLMG00005008229
UniProt:
A0A8C2XEL1
LinkDB
All DBs
Position
13:complement(7943126..7965984)
Genome browser
AA seq
598 aa
AA seq
DB search
MANLSEGAIEALSNGNGGNDAVLQLVNIRKIDSGSGPTRFRVMMSDGLHTLSSFMLSTQL
NFMAEENLLAPNCICILKKHVTNILKDKRRVVIILEIEVIKPAKDVAGRIGDPTPFAEGQ
IKGPQSAPNPETRQPLQQQVKNEVHKGFNRDFGKKPPSAMPSTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLVEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLSGESTIIPCEDSSDVPVMQCDFVSIGDLENREKD
SIIDVIGVCKSVDEVTRLTTKSNKEVSKRTLNLMDMSGKLVTVTLWGEEAEKFDGSAQPI
LAIKGAKLSDYGGRSLSASFSSTLIINPDIPEAYKLRGWYDKEGHALDGQSVTEVKGSGG
GLTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNGM
FRCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNEAA
FDEVFQQANFNTFVFRSRVKLETYNDESRIKATVMDVKPVDHKDYSKRLILNIRKLAA
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctctcagagggtgcgatagaggctctttcaaatggcaatggtggtaacgac
gcagtgcttcagttggtgaacattcgcaagattgacagtggaagtggtcctactcgcttt
cgggtgatgatgagtgatggactgcacactctgtcttccttcatgctctcaacgcagctg
aacttcatggctgaggagaacctcctggccccgaactgcatctgcattttgaagaagcat
gtgaccaatatactgaaggacaaacgacgggtggtgatcattttagaaattgaagtcatc
aagcctgcaaaagatgttgctggaagaataggtgaccctactccttttgctgagggtcag
atcaaaggcccgcagtcggcaccaaaccctgaaacccgccaaccactacagcagcaagtt
aaaaatgaagtgcacaaaggtttcaatagagactttgggaaaaagcccccatctgctatg
cccagtactccaggtggcagctctaaagttgtgcccatcgccagcctcaacccctatcag
tccaagtggactatccgtgctcgtgtaaccaacaagagcagcatccgtacatggagcaac
tctcgtggtgatggcaaactcttctccatggagattgtggatgagagtggagagataaga
gtgactggttttaaccaagaggtggacaagttcttcagcctggttgaggttggcaaggtc
tactatgtctccaagggctccctgaagatcgccaacaagcagtacacatcggtgaagaat
gactatgagatgactctcagtggagaatccaccatcatcccctgtgaagacagcagtgat
gttccggtgatgcagtgtgactttgtctctattggtgacctggaaaaccgcgaaaaagat
tccatcattgatgtgattggagtgtgtaagagtgtggacgaagtgacccgcctcaccacc
aagtcaaacaaggaagtgtccaagaggacactcaacttgatggacatgtctggaaagttg
gtgactgtcacgctgtggggagaggaagcagaaaagtttgacggatccgcacagcccatt
ttagccataaagggagcgaagctttcggactatggtggccggtccctctcggcatccttc
agcagcaccctgataatcaacccagacatccctgaggcttataagctcagaggctggtat
gacaaggagggccacgccctggatggacagtctgtgacggaggtgaaaggcagcggggga
ggactcaccaactggaagaccctgtctgacgttaagacggagcacctgggacatggagac
aaggcggactactacacctgcatagctaccatagtatacctgcgcaaggaaaactgcctt
taccaggcctgtcccagccaagactgcaacaaaaaagtggtggaccagcaaaatggcatg
ttccgctgcgaaaagtgtgacaaagagttccctaacttcaagtaccgcctcatcctttct
gccaacattgcagattacgcagacaaccagtgggtcacttgcttccaggagagtgcagag
gccatcctgggccagaatgcagcttacctggggcagctcaaggactcgaacgaagctgcc
tttgatgaggtcttccaacaagccaatttcaacacttttgtcttccgcagcagagtgaag
ctagaaacatataacgatgaatccaggatcaaggctacggtgatggatgtcaagcctgtt
gaccataaggactacagcaagaggttgatcctgaacataaggaaactggctgcttag
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integrated database retrieval system
