Cyclopterus lumpus (lumpfish): 117741441
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Entry
117741441 CDS
T09199
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04136
Autophagy - other
clum04140
Autophagy - animal
clum04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117741441 (atg16l1)
04136 Autophagy - other
117741441 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117741441 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117741441 (atg16l1)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117741441 (atg16l1)
Membrane trafficking [BR:
clum04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
117741441 (atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
117741441 (atg16l1)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117741441 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
eIF2A
AP5B1_middle
Cytochrom_D1
HALZ
Mis12
Motif
Other DBs
NCBI-GeneID:
117741441
NCBI-ProteinID:
XP_034404383
Ensembl:
ENSCLMG00005005723
LinkDB
All DBs
Position
13:complement(21741103..21760122)
Genome browser
AA seq
601 aa
AA seq
DB search
MAERRVECSWKRHVSEQLKIRDRVQRQAFEEIVLQYNRLLEKSDLQTVLSERYQTDKYDV
QRGHEASSGTDVLQQEMSQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKDKEIQSNT
ARMLEYQQQITSLEGDCRELRSFLQDLERANQTLKDEYDALQITFSALEEKLRKTTEDNQ
ELVSRWMAEKAQEANKLNAENEKDSRRRQAKLQKELADAAKEPLPIEPDDDIEVLAEDGG
KGAGETSPKRPLIRTPSKNIAQPPPGGLLDSFSNIFGRRRPANSSSSSPENNEAPSGVCA
EVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRVKLWEVVAGHCEPKGALTGSN
AGITSIEFDSTGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSARFLLDNARIVSG
SYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRTESRGQELE
LLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRTNAVRQTLSAQGFKCGADWTRVTFSPDG
RYVAGGSADGSLYIWNVLTGIVDRTLDRNHNSAINSVSWSPSGAFVASVEKGGRAILWSD
M
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcgggtggagtgttcgtggaagagacacgtctcagagcagctgaagatc
agagaccgagttcagagacaggcctttgaggagatcgtcctccagtataaccgtctgctg
gagaagtccgaccttcagaccgttctgtcagaacgataccagacggacaagtatgacgtc
cagagaggacacgaggccagctcggggactgacgtcctgcagcaggagatgtctcagatg
agaatcaaacaccaggaggagctgacggagctgcacaagaaacgaggagagctcgctcag
aacgtgatcgaactgaacaaccagattcaacagaaggacaaggagatccagagcaacacg
gccaggatgttggagtaccagcagcagatcaccagcctggagggagactgtcgggagctg
aggagcttcctgcaggacctagagagggccaaccagaccctaaaagatgagtacgacgcc
ctgcagatcaccttctctgctttggaggagaagctgaggaagaccaccgaagacaaccag
gagctggtgtcccgctggatggccgagaaggctcaggaggccaacaagctgaacgccgag
aacgagaaggacagcaggcgtagacaagccaaactgcagaaggaactggccgacgcagcc
aaagagccgctgcccatcgagccggacgacgacattgaggttctggcagaggacgggggc
aagggggctggagagacctccccgaagaggccgctcatcagaactccgagtaagaacatc
gcccagcctcctcctggtggtctgctggactccttctccaacatatttggcaggcgtcga
cctgccaactcttccagctcttcacctgaaaacaatgaagccccttctggagtgtgtgca
gaggttcgagtcccttcaacagctctgcacgtgtttgaagcacacgacggagaggtcaac
gcagtgaggttcagccctggatctcgtctcctagcaacaggagggatggaccgtagggtg
aaactgtgggaggtcgttgcaggtcactgtgagcctaaaggcgctctaaccggcagcaac
gctggaatcaccagcatcgagttcgacagcactggctcctacctgctggccgcctccaac
gacttcgccagccggatctggaccgtagacgactacaggctgaggcacaccttgacgggt
cacagtgggaaggtgctgtcagctcgcttcctattggacaatgctcgaatcgtctccggg
agctacgaccgaacactcaagctgtgggacctccgcagcaaagtctgtatgaagaccgtc
ttcgctggttccagctgtaacgacattgtgtgcacggagcagtgcgtcatgagtggacac
tttgataagaaggtcagattctgggacatcagaacggagagtagaggtcaggagctggag
ctgctaggcagagtgacctctctggacctgaaccacgaccgcaccgagctgctcacctgc
tccagagacgacctggtgaagatcatcgacctgcgcaccaacgctgtgagacagacgctc
agtgctcagggcttcaagtgtggagccgattggaccagagtcacctttagtcctgacggc
cgctatgtggccggaggatcagctgatggatctttgtacatctggaacgtcctgacgggg
attgtggaccgaactctggaccgaaaccacaactctgccatcaactcggtgtcctggtcg
ccttcaggagcattcgtcgccagtgtggagaaaggcggtagggccatcctgtggtctgac
atgtga
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integrated database retrieval system
