KEGG   Cyclopterus lumpus (lumpfish): 117741461
Entry
117741461         CDS       T09199                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03020  RNA polymerase
clum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117741461 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117741461 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clum03021]
    117741461 (polr2d)
   03400 DNA repair and recombination proteins [BR:clum03400]
    117741461 (polr2d)
Transcription machinery [BR:clum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     117741461 (polr2d)
DNA repair and recombination proteins [BR:clum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117741461 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 BIG2_C Tfb4
Other DBs
NCBI-GeneID: 117741461
NCBI-ProteinID: XP_034404418
Ensembl: ENSCLMG00005007516
UniProt: A0A8C2X6Q4
LinkDB
Position
13:21393053..21397257
AA seq 141 aa
MAAGSAAAVGDVEEDASQLLFPKEFESSETLLNSEVHMLLEHRKQQNESAEDEQELSEVF
MKTLNYTARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEGR
FEDEELQQILDDIQTKRSFQY
NT seq 426 nt   +upstreamnt  +downstreamnt
atggcggcgggaagcgcggcggcggttggtgacgtagaagaagacgcgtcacagctcctg
tttcctaaagagttcgagagctcggagacgctgctgaactccgaggtgcacatgctgctg
gagcaccgcaagcagcagaacgagagcgccgaggacgagcaggagctgtccgaggtcttc
atgaagaccctcaactacaccgccaggttcagccgcttcaagaaccgggagaccatcact
gccgtgcgcagtctcctgctgcagaagaagctccataagttcgagttggccagtttagcc
aatctgtgtcccgaagctgcagaggaggccaaagccctgatccccagtctggagggtcgg
tttgaagacgaggagctgcagcagatcctggatgacatccagaccaagagaagcttccag
tactga

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