Cyclopterus lumpus (lumpfish): 117741530
Help
Entry
117741530 CDS
T09199
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117741530 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117741530 (scarf1)
Membrane trafficking [BR:
clum04131
]
Endocytosis
Phagocytosis
Scavenger receptors
117741530 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
117741530
NCBI-ProteinID:
XP_034404507
LinkDB
All DBs
Position
13:complement(2935319..2942372)
Genome browser
AA seq
916 aa
AA seq
DB search
MKFLLRALSALLCCSLSSSQTLDPTGRNVCHNIRLPSTLVCCTGWRQEGKECTIPVCEGE
QACLKDEICVYPGVCRCPPGYYGAHCKTRCPLEFWAPDCRQVCPCYPHGQCHPVTGECTC
NPNRWGPLCQYACKCARHGHCHPVHGNCSCNEGWWTPTCSKPCQCVSGGSAGPGCDQLTG
RCQCHRGHWGLKCPATCNCYLSPCYQRTGVCECETSWWGPSCDRRCNCDLTHSSCDPAKG
QCLCHPGYQGIFCNQPCEAGKYGSGCQMSCGFCKDKQLCSDTDGSCDACESGWNGTQCDR
PCPSGSYGDGCQEKCPRCRNNEPCDPKTGKCWRCDPGWTGPRCEEACSNRTFGDACSSLC
SPCFHGDCNHVTGRCVCQPGFQGESCNSSCPALQFGLNCSSACDCSEGDSCDPVTGVCPN
SGRAAVLAGVLVPLLLLLLAVLCCCLCCGGGPVDGKDSATVADGGWSVRMKYHVYSVLAN
IGAAIPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSCGWVTEGSSFDSDEEEEEALYC
IPPREDIPAVAGGEFHEMSSKCNMFLDPCGFSSEDITSPFNIPRTSSIAKSKRPSVSFAE
GTRFSPKERRGSVQDPGALPGHPRNKPKSPWGVLMLSALQSQESAARTGEEDGAESEEGE
DEVDVQVTGNQDSSCEPGDQEVDRTPSRATLHVPGASGRRRAMSNTAAHKGTQLPTSDAQ
MGVLNKVTTVYVTVGKAGRPVSKTETSSEGPVQAMLRRIGSLQRQREQESGKAKPKGAEG
ITKPPRRKLGARASVWEEGGPPGGEVGICKPIRRKHAALNSADTAGANDTPLSESGTPKR
PLSFVLKSVPEVVSSVPGSDLRNESGDPSAGKTEGTYLTVGPAGDTVSLTEVITNKGAVV
GVDDEPCYENVMITHS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttctcctcagagctctcagtgctctgctctgctgctcgctgtcctcctcccaa
acactggatcctactgggaggaacgtctgccacaatatcaggctcccttcaaccttggtc
tgttgcactgggtggcgtcaagagggaaaagagtgcaccatacccgtgtgtgagggagag
caggcctgcctgaaggatgagatctgtgtgtatcctggagtgtgtcgctgcccacctggt
tactacggagctcactgtaaaacacgctgtcctcttgagttctgggctccagactgtcgc
caggtgtgtccgtgttacccacacggccagtgtcaccccgtcactggtgaatgcacttgc
aaccccaaccgctggggtccactgtgtcagtacgcctgcaagtgcgcccggcacggccac
tgccaccccgtccacggaaactgcagctgcaacgagggctggtggacgccaacctgctcc
aagccgtgccagtgcgtcagcgggggctctgcgggccccggctgcgaccagctaacgggc
cggtgtcagtgtcacaggggtcactgggggctcaaatgtcctgccacttgcaactgctac
ctgtcgccatgttaccaacgtaccggtgtgtgtgagtgcgagacaagctggtggggaccc
agctgtgaccggcgatgtaactgtgacctcacacacagcagctgtgacccggccaagggg
cagtgcctgtgccacccggggtaccagggtatcttctgcaaccagccctgtgaggctggg
aagtacgggagtggatgtcaaatgagctgtggtttctgtaaagacaagcagctctgctct
gacaccgatggctcctgtgatgcctgtgaatccggctggaatggcacacaatgcgaccgc
ccgtgcccgtctggttcttatggagacggctgccaggagaagtgtccacgctgcaggaat
aatgagccctgtgaccccaaaactgggaaatgctggaggtgtgaccctggatggactgga
cccaggtgtgaggaggcctgctcgaacaggacgtttggagatgcttgcagctccctgtgt
agcccttgtttccatggtgactgcaatcatgtgacaggaagatgtgtctgtcagccgggc
tttcagggagagagttgtaacagcagctgccccgccttgcagtttggcctcaactgttcc
tcagcctgtgactgtagtgaaggggacagctgcgacccagtcactggtgtctgtcccaac
agtggcagagctgctgtactagcaggtgtgcttgttcctctgctcctgttgctccttgct
gtgctctgctgctgtttgtgttgtggaggaggtcctgttgatggcaaagacagtgcgact
gtggctgatggaggctggtcagtgcggatgaaatatcacgtttacagcgtcctggctaac
atcggtgctgccatcccctgtatttctgattggtcctctggcctccctcgtgtcactgtg
tctcaccatgacccagagctgacgttcaaccacagtttcattgagcctccttcctgtggc
tgggtgactgaggggtcatccttcgacagtgatgaggaggaggaagaggcgctctactgt
atcccgccaagagaagacatcccggcggtggcgggtggcgaattccacgagatgagctcg
aagtgtaacatgttcttagacccatgcggcttcagcagtgaggacatcacctcgcccttc
aacatccctcgcacctccagcatcgccaagtccaagcggccgtctgtctcttttgcagag
ggcacccgtttcagccccaaagagaggcgtggctcggttcaggaccccggcgctctccct
ggacacccacgcaacaaacccaagtcaccttggggggttttgatgctgtctgccctccaa
agtcaggagagtgcagctagaactggggaggaagatggagctgagagcgaggagggggaa
gatgaagtcgatgtgcaggtgacaggcaatcaggattccagctgtgagccgggggaccag
gaagtagacagaaccccttccagggccaccctgcatgtccctggggcatcaggacgaagg
cgagctatgtccaacacagctgctcataaaggtacgcagctgccgacatctgatgctcag
atgggggtcttaaataaggtcaccacagtgtatgtgacggtgggtaaggcaggtaggccc
gtttcaaagacggagacgagctctgaagggccagttcaagccatgctgcggcgaatcgga
agcctccagagacagagggagcaggagtctggcaaggccaagcctaaaggagctgaaggg
attaccaaaccaccaaggaggaagctcggagctcgggcgagtgtgtgggaggagggaggc
ccacctggaggggaggtgggcatatgtaagccaatcaggagaaagcatgctgctctcaac
tccgctgacacagctggtgctaatgacactccattatcagagagcggcactccaaaaagg
cctttgtcatttgttttgaagagcgtgccagaggtggtttcatctgtcccagggtcagat
ctgaggaatgagagtggtgaccctagtgcaggaaaaactgagggcacctacctgactgtg
ggaccagcaggagacactgtgagtctcactgaggtcatcaccaataaaggtgcagtggtc
ggtgtggatgatgaaccctgctatgaaaatgtcatgattacacactcataa
DBGET
integrated database retrieval system
