Cyclopterus lumpus (lumpfish): 117741562
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Entry
117741562 CDS
T09199
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04270
Vascular smooth muscle contraction
clum04625
C-type lectin receptor signaling pathway
clum04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
117741562 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117741562 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
117741562 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117741562 (arhgef12a)
Membrane trafficking [BR:
clum04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
117741562 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
117741562
NCBI-ProteinID:
XP_034404561
Ensembl:
ENSCLMG00005014578
LinkDB
All DBs
Position
13:complement(3746551..3782375)
Genome browser
AA seq
1434 aa
AA seq
DB search
MSDTQSSFTDRFPKKANRTSSILSKDHPPDKKPKSDKTSLPSNEFDPTEALQKSGSSSVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVN
GTLVTHSNHIEVVKLIKSGSYVALTVLGRPPGLAQIPLSEAESEMLGVSISSPNSPAAER
PYSALDRLSFTQPPWDENSSVCNQRVDMLQKMLSKEQQELQVMKEEYSRNPSPKLLKDIQ
EAKKHIPQLQGQLLKATGATQEAVPGGDADDGSMFETQHSKGDNSTDLSWSSTPLSCRFG
PGSPESLYQRQSSSPKSTPRNSFNSCHSPEAEDATDLDSLSPTTVSSTSSARLASQIIGA
EDDYFDSDQEQTNGQCNSFNNVEQLKSRPAHLAAFLHHVISQFDPAPVLCYLYADFYKQT
NSKETRRVFMDLLTFFIDRGANLKVAVPESISTDLDRRRTELIPEEINRQHVQTLQDSLL
PDIQKNLEDFRQKRSMGLTVAEVELARLDQERVRDRVALERERSYAENIITKIEEVLLTT
QTTEEEKCTTMQYVIYTYMKHLGVRVKEPRSLESKRVRINFLPKIKKSIKTEKEGEEKVK
KPRFPSILGPQRRPSRIEAASVGKALDGRPRPQKQLSQPTLGASDHMEAGRLRGSQSSEG
SELMHSMSTNTTIPNSATYSSDNSRDTDMGGTPTSGLSRLSDGLQSDPLDGLPYPASHFD
LYSLDQLQEDDRESDRTHEGTPKVIRRLEGLGAADVQSEDDQGTDSEHDPPNWQQLVGRE
VLAGLRPQEIKRQEVINELFYTERAHVRMLRVLDHVFYQKLSKEAILPPADIKNIFTNLD
EILQLHASILEQMAAVRKRNESSVIDQIGDDLLTWFSDGEEEKIKKAVGMFCSNQPFALE
IIKTKQKKDSRFTSFVQEAESNRLCRRLQLKDIIPVEMQRLTKYPLLLDNIAKYTDNAVE
KDKVKQAADGCRKILNHVNQAVKESEDKQRLEDYQRRLDLSSLKQTDNPMILELKNLDLT
KRTMVHEGPLSWKVNKDKTIELYTLLLQDILVLLQKQDERLILKCHSKNLAGTADTKHIF
SPIIKLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAPTVSDQRTWQRLITQRADAMKV
KPHSVIPLPQADGERDGVEIITAGVSRLSRDPDRTSTGSTQSTDKESSPAPRSVTQSSLP
SNNPFEGIKTEEEEEEGFVDPELPYQAAKDGKGGDSFNMFPSRADEALKTLAALKQVLVT
QLMSQEALEQTKRSTGVRLLRTTSLRTPVDSRARVMVHNGSEKNSSQIEDPTQDLGSGDT
GFFDSPEDYAGYLVLEGYGGPGESSTDDDILASTTGKQLRSSQGCAADSGINLRFSSTSQ
AGSLSSFSRQVLSHLRNLQANLNYLKEVEAKYNNIIRQRPERSAADTDGNKDKR
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccagcttcactgacaggtttcccaagaaagcaaacagaaccagc
agcattctcagtaaagaccaccccccggacaagaaacccaaaagtgacaaaacctcactt
ccctccaatgagtttgaccctacagaagctctgcagaagagtggcagcagcagtgtgcta
gcagaggggaagcctgagtcctgtggtctggttcaacgatgtgtaatcatccagaaagat
gaaaatggctttgggctcactgtcagcggtgacaacccagtgtttgtgcaacttgtcaaa
gaagatggggctgccatgcgggcaggtgttcagacaggggataggatcatcaaggttaac
gggacccttgttacacattcaaatcacattgaggtggtgaaacttatcaaatcgggctcc
tatgtggccctcacagtgttggggcgtcctccagggctcgcccagatccctttgtctgaa
gcagagtccgaaatgttgggggttagcatttcgtctccaaactccccagcagcagaacgc
ccctacagtgctctggaccgcctctccttcactcaaccaccatgggatgagaatagcagt
gtctgcaatcagagggttgacatgttgcaaaagatgctctcaaaagagcagcaggagcta
caggtcatgaaggaggagtacagcaggaacccctcccccaaactactgaaagacatccag
gaagctaagaaacacattcctcagctgcagggtcagctcctcaaggccactggggcaaca
caggaggctgttccgggtggagatgcagatgatggtagcatgtttgagacgcagcactct
aaaggagacaacagtacagacctgtcctggagtagcactcctctttcttgcagatttggg
cctggatctccagagagcctttaccaaagacagtcatccagcccaaagagcacccccagg
aacagcttcaactcctgccactctccagaggcagaggacgccactgacctggactctctg
tctcctaccacagtcagcagtacctcttccgcccgcctcgcctctcaaataattggagct
gaggacgactacttcgattcagaccaggagcagacaaatggccaatgtaacagctttaac
aacgttgagcagctcaagtctcgtcccgcacacctcgcagccttccttcaccatgtcatc
tctcagttcgaccctgctcctgtgctgtgctacctctatgccgacttctacaagcagacc
aactccaaagagaccagacgggtgttcatggacctcctcacgtttttcattgaccgtgga
gcaaatttgaaagttgctgtccctgaatccatctctactgatctcgaccgccggcggaca
gaactgatccctgaggaaataaacagacaacatgttcaaacactgcaggactctctgctc
cctgacatacagaagaaccttgaggatttcaggcagaagcgcagtatgggcctcacagtg
gctgaagtagagctggccagactggaccaagagagagtcagagaccgtgtcgctctggag
cgagagcgctcatacgctgaaaacatcatcaccaagatagaggaagtcttgttaactact
cagaccacagaggaagagaaatgcactacaatgcagtatgtcatctatacatacatgaag
caccttggggtgagggtcaaggaacctcgaagtctggagtccaaacgtgtcaggatcaac
ttccttcccaagatcaagaaaagcatcaagacagaaaaggaaggagaagagaaggtgaag
aaacccagatttcccagcatccttggacctcagcgtcggcccagccgcattgaagcagca
tctgtaggtaaagccttggatggtcgcccccggccgcagaaacagttatctcagccgaca
ctcggggcaagtgatcacatggaagctggtcgtctcagaggcagccaatcgagtgagggc
tcggaactcatgcactccatgtctaccaacaccacaatcccaaacagcgccacctatagc
tcagacaatagccgagacactgatatgggtgggactccgacctcaggcctgtccaggctg
agtgacggccttcagtccgacccccttgatgggttgccgtaccctgcttcgcactttgac
ctttacagcctggaccaactgcaagaggatgacagagaaagcgacagaacccacgaggga
acaccaaaggtcataagaaggctggagggactgggagcagctgacgtccagagtgaggac
gaccagggaacagactctgagcatgaccctccaaactggcagcaactggtggggcgagag
gtcctagcgggtctcaggcctcaggaaatcaagagacaagaagtcattaacgagctgttt
tatacagagcgtgcacatgtaaggatgctgagagttttggaccacgttttctaccagaag
ctctccaaagaggccatcctgcctcctgctgacatcaagaacatcttcaccaacctggat
gagattctacagctgcatgcttcaatactggagcaaatggctgctgttcggaagagaaat
gagtcttcagtaattgatcagataggagacgacttgctcacttggttcagcgatggagag
gaggagaagatcaagaaggcggtggggatgttctgcagcaatcagccatttgctcttgag
atcatcaagaccaagcagaagaaagactcgcggtttacttcgttcgtccaggaggcagaa
agtaaccgactgtgccgccgactgcagcttaaggacatcattcctgtcgagatgcagcgg
ctcaccaagtacccgctgctcctagacaacatcgccaagtacacagacaacgccgtagag
aaggacaaagtgaagcaggcggcagacggctgtagaaagattctcaatcacgtcaaccag
gctgtcaaggaatctgaggacaagcagaggttggaggactatcagagaagattggacctc
tcttctctgaagcagaccgacaacccaatgatcctggagctaaaaaatttggatttaacc
aaaagaacgatggtgcacgagggacctctgtcatggaaagtgaacaaggataagactatt
gagttgtacaccctcctgctgcaggacatcttggttctactccagaaacaagatgaacgg
ctgatcctaaagtgtcacagtaaaaacctggcaggcaccgcagataccaaacatatcttc
agccccatcattaaactgaacactgtgctggtccgctctgtggccacagacaacaagtcc
ttcttcgtcctatccatgtcggacaacggagcccagatctatgagctgatggcgcccaca
gtctcggatcagagaacgtggcagcgtctaatcactcagagagccgatgccatgaaagtc
aaacctcacagcgtcataccattacctcaggccgatggggagagagacggggtggagatc
attacagcaggtgtttccaggttgagtcgagacccagaccgcacatccaccggcagcacc
cagtccacagataaagagagcagtccagcccctagaagtgtgacgcagagttctctacca
agtaataatccatttgagggaataaagacagaggaagaggaggaggaaggttttgtggac
ccagagcttccttatcaagcggctaaagatggcaaaggaggagactcgtttaacatgttt
ccctccagagcagacgaagcactgaaaacattggcagcattgaagcaggtgttggtgacc
cagctgatgtcccaggaggctttagagcaaaccaaacgctccacgggcgtacgtctcctc
aggaccacctctctgcgtacacctgtagacagccgcgctcgggtgatggtccacaatggc
tcagagaagaacagctcccagatagaggacccaactcaggacctgggctctggggacaca
ggcttctttgattctcctgaagattatgcagggtatctagttctggagggttatggtggc
ccaggggagagcagcacagatgatgacatattggcatcaaccacaggaaagcagctgaga
tcctcacagggctgtgctgctgactctggaatcaacttgcggttttcttcaacgtcacag
gctggcagcctctcctctttcagcagacaggtcttgtctcaccttagaaaccttcaggcc
aacctcaactatctgaaggaggttgaggccaagtacaataatataatacgccaaaggcca
gagaggtcagcagcagacacggatggaaacaaagataaaagatag
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integrated database retrieval system
