Cyclopterus lumpus (lumpfish): 117741594
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Entry
117741594 CDS
T09199
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117741594 (npas1)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117741594 (npas1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
117741594
NCBI-ProteinID:
XP_034404617
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Position
13:complement(4718335..4740921)
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AA seq
811 aa
AA seq
DB search
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWSPLMEGDSHCRKVRRSSNSLA
TDMFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHTGPESASSSASTSSLAGTPEPAPSSPHSPADDPPDRGYF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSARSVRRPIGLVSLAHTLPPSSL
NEVRMESQMFVCRVNMDLQVTYCENRISEYMDLTPAEVVGHTCYHFIHVEDLENLRHSHE
DLLRKGQVVTGYYRWLQRRGGYLWIQSSATVSINHKAPHERNVIWVNYVLSRTELPDTPL
DILQLPENVRAERLRVSSSPTDSSPQARGSTGSQPAKSSVGKSDPDTKGRDKFTPAAIQS
EDRRKRLLRSDPEGAPPETRRRLEELRHAEESVSASSDLASESEGEEEEETEWDQGGNSD
RLKEEDSGAGKQSRGGDTRGESGSRVHNGRAVIQQLKSVVTPSPLPGSPSIKTEHEALTT
GGRWGPHTQTSNSRTHTTQPQPSHAHTPSSSLNGDSPTTPIPDSSSSSEAPPKGLFTPPS
PALSPAMSVSSPLPRDDRAVSGLVTRSSGGACSTPDFELLQRLAAGGAAGRVLFHPLALG
PQGPQSLYAPSTIRYAPPELPPSHHHGIEHSDGLQLRSDHHKGPPPAFFPHLQRLAGLPP
FSGFSPSDSPFSSGLPFCMNGLRGAAGSEED
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatgccgtttgtcagtgaagggaagtgtgtgagtgtggagtgggatttccta
caaggactactggccaagccacccacccttccctgtctccagaacctgcgtaaagagaag
tctcgcaatgcggctcgttcacggcgggggaaagagaatttcgagttctttgagttggcc
aagatgctgcctctgcccggagccatcaccagccagctggacaaggcctcagtcatccgg
ctgaccataagttacctgcacatgcgcacctttgccagccagggagacccgccctggagc
cctctgatggagggagacagccactgccgaaaagtaagacgatcatctaattctctagcc
actgacatgtttgagcagcacctaggggcgcacctcctgcagtctctggatggctttgtg
ttcgtggtcagtcaggagggacgtttcctctacatctcagagacagtttctatctacctg
ggactctcacaggtggagctgaccggcagcagtgtgtttgattacatccacccggcggac
cacgtggagatggccgagcggctgggaatcaggccgcatctgagggccgaggccggctgc
catacgggccccgaaagcgcttccagctccgcatccacctcatccctggctgggactcct
gaacccgctccatctagtcctcattctcctgctgatgatcctcccgaccgcggctacttc
atccgcatgaagtccacgctcaccaaaagaggcttgcatgtcaagtcttctggttacaag
gtaatccatgtaacgggacgaatccgctgccgccctgcacttgtgccgggctctgcacgc
tcagtgcgtcgaccgataggtttggtttcactggctcacaccctcccgccctcctcactt
aatgaagtccgcatggagagccaaatgtttgtctgccgagtgaacatggacctacaggtc
acatattgtgagaacaggatctcagagtatatggatctgacccctgcggaggtggtggga
cacacctgttaccacttcatccatgtagaagacctggaaaacctccggcacagccatgag
gacttgctaaggaaaggccaggtggtgacgggttactaccgttggctccagaggagagga
ggctacctgtggatccagtccagtgccaccgtctccatcaaccacaaagccccccacgaa
cgcaacgtcatctgggtcaactacgtcctgagtcgaacagagttgcccgacactcctctg
gatatactgcagctaccggagaatgtgagagcagagcgacttcgagtcagctcgtctccc
accgacagttccccccaggctcgaggctccacaggttcgcaaccagcaaagagctcggtg
gggaagagtgaccccgacactaaaggcagagataaatttacccccgctgccatccaatca
gaggacaggaggaagcgcctgctgaggtccgaccccgagggtgctcctcccgaaacccgt
cgcagactggaggagctccgtcacgcagaggagagtgtatcggcctcttctgacctggcg
agcgaaagcgagggggaggaggaggaggagacagagtgggaccaggggggaaacagtgac
cgactgaaagaggaagacagtggagcaggtaaacagagtaggggaggagacacccgaggg
gagagtgggagcagggtgcacaacggccgggctgtgatccagcaactgaaaagcgtagtg
accccgtctcccctgcctggaagccccagcatcaagactgaacatgaagccttgaccacc
ggggggcgttgggggccacacacacagacctccaactcccgcacacacaccactcagcct
caaccctcccatgcacacacaccctccagcagcctcaacggcgacagccccactaccccg
atccctgactcttcttccagcagtgaggccccccccaaagggctgttcactcccccttcc
cctgctctttctccagccatgtctgtgtcctctccactgcctcgcgacgacagggctgtg
tcggggttggtcactcggagcagtggtggtgcatgtagcactcctgactttgagctgctc
cagagactggcagcaggcggtgcagcggggcgggtcctcttccacccccttgccctcggc
ccgcagggtcctcagagcctctacgctcccagcactatccgctacgctccacctgagctg
cccccctctcaccaccacggcattgaacacagcgatggcctgcagctacgctcggaccac
cacaagggacccccgccagccttctttccccacctacagcggttggccggcttgccaccc
ttcagtggtttctccccgtctgacagccctttctcctccggccttcccttctgtatgaac
ggactgaggggggctgcgggctccgaggaggactaa
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