Cyclopterus lumpus (lumpfish): 117741612
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Entry
117741612 CDS
T09199
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117741612 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
clum04990
]
117741612 (lrfn1)
Cell adhesion molecules [BR:
clum04515
]
Immunoglobulin superfamily
SALM family
117741612 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
clum04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117741612 (lrfn1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_1
Ig_2
ig
LRR_5
fn3
LRR_9
LRR_14
Ig_DSCAM-DSCAML_C
C2-set_3
Sp38
DUF4834
Motif
Other DBs
NCBI-GeneID:
117741612
NCBI-ProteinID:
XP_034404642
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Position
13:complement(7374225..7378450)
Genome browser
AA seq
758 aa
AA seq
DB search
MDRLVICVLLCAFLVKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITVIRRKDFFNMTSLVHLTLSRNTISQIIPHSFVGLRSLRALHMDGNRLSAIKTDQFK
GLINLRHLILGNNQIAEVAPTSFDEFVSTIEDLDLSSNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQQAEVLSDTKGSSFSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKYLSTKPYV
MEGQGVTLKCKAVGDPDPDIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
TELTSSSTVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKNFLINDLAAGREYD
LCVLAVYDDGITSLTAIRVVGCVQFHTASEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSDPEDSKTKVSSSMHSQTNGSQQRLQRSASKQLSDEGQREAHAPKEVM
ALVLRVDNEKKENPAATTAILEVELPPMTVDKMQRRTSLDAQRSGPPSEDTQTDSSLTGS
TMSLCLIGPNAGTKEAPRLKDKKSALANMGLLPNELARTRHRFSFDGGDYSIFQSHSYPR
RARTRWHKSTNQLNMESSPLANRRVTFSSTEWMLESTV
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtctggttatttgcgtgctgctgtgtgcatttctggtgaagggatacagctgc
ccgggccgctgtatctgtcagcacctctcacccactctgactttgctgtgtgctaagacg
ggtctgttgttcgtaccacccaccatcgaccgcaagaccgtagagctgcgactcacagac
aatttcatcaccgtcattcgtaggaaggactttttcaacatgactagtttggtccacctc
accttgtcccggaacaccatcagccagatcatcccccactcctttgtcggcctgcggtcc
ctgcgggcgctccacatggatggaaaccgcctgagtgcaataaagactgaccaatttaaa
ggcctcatcaacctgcggcacctcatccttggaaacaaccaaatcgcggaggtggcccct
acctcctttgatgagtttgtttccaccatagaggacttggatctttccagtaacaacctg
cgcaccctcccctgggaagccatagccagaatgaccaacattaacacactcacactggac
cacaacctgattgaccacattggagctggcactttcacattgctcaccaaactggttcgc
ctggacatgacctcgaacaggctgcagaaactgccgccagacagcttattccagcaagca
gaggtcctgtctgacaccaagggctccagcttctctacgctggcagtgagcttcggtgga
aaccctcttcactgtaactgtgagctgctgtggctgcgcaggctgacaagagaggatgat
ctggagacctgtgcctcgccagagcacctcatggacaagtatttctggtccatccaagaa
gaggagtttatctgtgagcctccgctgatcaccaagtatctttccactaagccttatgtg
atggaagggcagggtgtgactcttaaatgcaaagcagtgggtgacccagacccagatatt
cactggcggtcaccagacggcaagctggtgcataataactcccgcaccatcctgtatgat
aacggcacccttgatattctcatcaccacgctgaaggacagcggtgcatttaattgtgtg
gcatccaatgctgcaggcatcgccacagcggctgttgagatcaacatgatccccttaccc
ttgtttgttaacaacacaggccacatgcgtgaggaccccggcctctcagacatcaccacc
tcttctaaatctggcaacgacaccaaaggctacgacaagcaggacaggagggtgatggtc
accgagctgacctcctcctccactgtgatccgttggccttctgagcgccatatccccggc
atcaggatgtaccagattcagtacaacagcacggcagatgatactttggtgtacagaatg
atcccatctaccagcaagaacttcttaatcaatgatctggccgcaggacgagagtatgac
ctttgtgtgctggcggtttacgacgacggcatcacatcattaacggccatacgtgtggtt
ggctgtgtgcagttccatacggccagtgaggtcagccagtgccgcttcatgcacagccag
tttttgggaggcacaatgatcatcattatcggtggtataattgttgcttcagtgctggtg
ttcattatcatcctgatgatccgttacaaggcctacagcgacccagaggacagcaagacc
aaggtcagttccagcatgcactcgcaaaccaatggcagccagcagcggcttcagcgctcc
gcctccaagcaactgtctgatgagggccagcgtgaagctcacgcacccaaagaagtcatg
gcgctggtgctgagggtggataatgagaagaaagagaatccagcagccaccactgccatc
ctggaggtggagctgccgcccatgactgtcgacaagatgcagagaagaaccagtctggat
gcacagcgctctggccccccatctgaggacacacagacggacagtagcctgacgggctcc
accatgtccctgtgtctcataggccccaacgctggcaccaaggaggctcccaggctcaag
gacaagaaaagtgctctggccaacatgggattgctccctaatgagctggcacgaactagg
cacagattctcatttgacggaggggattactccatttttcagagtcatagttacccacgc
agagcgaggacgaggtggcacaagtccaccaaccagctcaacatggagtcatcgccgctc
gccaacaggagagttacattcagcagcactgagtggatgcttgagagcacagtctga
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