Cyclopterus lumpus (lumpfish): 117741655
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Entry
117741655 CDS
T09199
Symbol
si:ch211-11n16.2
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger FYVE domain-containing protein 1
KO
K17603
zinc finger FYVE domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117741655 (si:ch211-11n16.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
clum01009
]
117741655 (si:ch211-11n16.2)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117741655 (si:ch211-11n16.2)
03029 Mitochondrial biogenesis [BR:
clum03029
]
117741655 (si:ch211-11n16.2)
Protein phosphatases and associated proteins [BR:
clum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117741655 (si:ch211-11n16.2)
Membrane trafficking [BR:
clum04131
]
Autophagy
Other autophagy associated proteins
Others
117741655 (si:ch211-11n16.2)
Mitochondrial biogenesis [BR:
clum03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
117741655 (si:ch211-11n16.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
FYVE_CARP1-2
GBP
Motif
Other DBs
NCBI-GeneID:
117741655
NCBI-ProteinID:
XP_034404706
LinkDB
All DBs
Position
13:17525782..17532550
Genome browser
AA seq
673 aa
AA seq
DB search
MLNFRFRFRSLNPAMSEILMKEMESISIGPAKAEETPDGGRSFPAGGRTRNLQVHDETEF
VDQLGCGDVAGVKVLSIFGNTGDGKSHTLNHILFGVRTVFYTSKSPSSCTXGVWAAYDPV
LGLVSLDTEGLLGAAANQNQRMRLLLKVLAVSDIVVYRTRAXRLHNDMFQFLGNASGAYL
KHFTPELRALSSRCGLDVPLSFSRAGCIVFQETTHTQLLGHDSKGTGQADTLLQKRFHDL
GLGTEAFSSVQYVGTQTITPPTDYRPLLEAVRQQVKNTHTRSPRQPGDRVSRAWEALSER
FCGELSDDKMTPHSFFPDEYFTCSAFCLSCNIRCKNGMNHLRDRVPHMADGLCQYVHQYN
NKVLICKRCYEGGREVIVLPKRRPASTDNPWFGLAKYAWSGFVLECASCGVIYRSRQYWT
GNQDPESGVVRSEIKHVWEGSDTFLTNHQNAAQRVLDGDELRDPVRDREYSTGPTKAVAA
WVTDQVAPPYWRPNTEITACHSCRKLFEEAERKHHCRSCGEGFCHPCSSHRMPVPERGWG
SGPVRVCKACYQQGGPVDTTSSQVCKVDPRGLIARRVTEVAQSTLDMVTTAVDYPLCFVK
DVARPDYWVPDQDIAQCHQCSKTFTPAMSKHHCRACGQGVCGPCSTRVKPVPSRGWDHPV
RVCDGCHARQDSL
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttgaactttcgttttcgttttaggtcattaaacccggcgatgtccgaaatactcatg
aaagaaatggagagtatctcgatcggtccggcgaaggcggaggagactccggacggtggg
cggagctttcctgctggtggacgaacaagaaacctgcaggtccacgatgagaccgagttc
gtggaccagctcggctgcggtgacgtggcgggcgtcaaggtgctctccatcttcggcaac
accggcgacggcaagtcccacaccctcaaccacatcctgttcggcgtgcgaaccgtgttc
tacacctccaagtcgcccagctcctgcacgngtggggtgtgggccgcgtacgaccccgtc
ctcggcctggtctccctggataccgagggcctgttgggggccgcggccaaccagaaccag
agaatgcggctgctgctaaaggtcttggcggtgtctgacattgtggtctatcgcacgcgg
gccnggcgcctccacaacgacatgttccagttcctgggcaacgcctcgggggcctacctg
aagcacttcaccccggagctcagggccctctccagccgctgcggtctggacgtgcccctc
tccttctctcgggccggctgtatcgtcttccaggaaacgacgcacacccagttactcggt
cacgattctaaggggacgggccaagccgacacgctgctccagaagcggttccacgatctg
ggattggggaccgaggccttcagctcggtgcagtacgtcggcacccagaccatcacgcct
cccaccgactacaggccgctgctggaggccgtcaggcagcaggtgaagaacactcacacg
cgctccccccgccagcccggggatcgtgtttcacgcgcctgggaggccctaagtgagcgt
ttctgtggagaactgtccgacgataagatgaccccccactctttcttcccagacgagtac
ttcacctgctcggctttctgcctcagctgcaacattcgctgcaaaaacggaatgaaccat
ctgagagacagggtgccccacatggcagatggactgtgccagtatgtccaccagtacaac
aacaaggtcctcatctgtaagaggtgctatgaaggaggcagagaggtgattgttttgccc
aagagacgtcctgcttccactgacaacccatggtttggactggccaagtatgcctggtca
ggctttgtgttggagtgcgctagctgtggtgtaatctaccgcagcagacagtactggacg
ggaaaccaggaccccgagagcggcgtggtgcgatctgaaatcaaacatgtctgggaaggg
tcggacacctttctgaccaaccaccagaacgctgcccagagggtcctggatggggatgaa
ctacgtgatccagtccgtgaccgtgagtacagcacggggcccaccaaggcggtcgccgcc
tgggtcaccgatcaggtggcgccgccgtactggagacccaacaccgagatcaccgcctgt
catagctgtcggaaactattcgaggaggcggagaggaagcaccactgccggtcgtgcggc
gagggtttctgccacccgtgctccagccacaggatgccggtgcccgagaggggctggggc
agcggccccgtcagggtgtgcaaggcctgctaccaacagggggggccagtggacaccacc
agcagccaggtgtgcaaggtggaccctcgcgggctgatagctcgccgagtgaccgaggtg
gcccagtccacgctggacatggtcaccacagcggtggactaccctctctgtttcgtgaag
gatgtggctcggccggactactgggtgccggaccaggacatcgcccagtgccaccagtgc
tccaaaaccttcaccccggccatgtccaagcaccactgcagggcctgtggacagggcgtg
tgcggcccgtgctccacccgcgtcaagcccgtgccctcccgaggctgggaccacccggtc
cgagtgtgtgacggctgccacgcccgccaggacagtctgtga
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