Cyclopterus lumpus (lumpfish): 117741894
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Entry
117741894 CDS
T09199
Symbol
robo1
Name
(RefSeq) roundabout homolog 1
KO
K06753
roundabout, axon guidance receptor 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117741894 (robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117741894 (robo1)
Cell adhesion molecules [BR:
clum04515
]
Immunoglobulin superfamily
ROBO family
117741894 (robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
Ig_5
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Unc5_NetrinR_N
Ig_C17orf99
Ig_PDGFR_d4
Motif
Other DBs
NCBI-GeneID:
117741894
NCBI-ProteinID:
XP_034405041
Ensembl:
ENSCLMG00005005877
LinkDB
All DBs
Position
13:8857221..8978570
Genome browser
AA seq
1664 aa
AA seq
DB search
MMSPTSIGFVLLLGVVHVCSGSRLRQEDTAPRIVEHPSDLIVSKGEPATLNCKAEGRPTP
TVEWYKDGERVETDRDNPRSQRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAV
SHNASLEVAILRDDFRQNPADVIVAAGEPAVLECQPPRGHPEPTISWKKDGTNIDDRDER
ITIRGGKLMITNARKSDAGKYVCVGTNMVGERESEIAELTVLERPSFVRRPSSQVVLVDQ
SVEFRCEARGDPVPTVRWRKDDGDLPKGRYEIREDHTLKIRRLTSADVGSYSCVVENMVG
KAEASATLTVHVMSVPPAFVVRPRNQVVGVGRTVTFQCEATGNPQPAIFWQREGSQNLLF
SYQPPQPSSRLSVSQSGDLTITDAERSDMGYYSCQAINTAGSVLTKALLEITDVISDRPP
PVIRQGPTNQTVAVDGTVVLNCMATGNPTPTILWRKDGVLVSTHDSRVKQLDTSALQIRY
AKLGDTGTYTCIASTPSGEASWKAYLEVHEFGVPVQPNRPTDPNLIPSAPSKPEVTDVTR
TSISLSWRPNLNAGATPTSYIIEAFSHASGSSWQTLAEHVKTESFVLKGLKPSAVYLFLV
RAANAYGLSDPSPITESVKTQDIPPTSQGVDHRQIQTELGEVLIHLHNPTILSSSSVRVQ
WTVEQQSQYIQGYKVMYRPSPEGLQRSEWAVFEVRTPGEDSAVVPQLRKGVAYEFKIRPF
FNEFQGTDSDVKIGKTLEEAPSAPPREVTVAESGDNGTAIVVSWQPPPEEEQNGVVQEYK
IWCLGNESRFHINRTVDGSALSVLIPSLAPGIRYSVEVAASTGAGPGVKSDITFFQLDAS
GRMTETVDQENPLSQQISDVVKQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLSSSYA
GIRKVPSFTFTPTVAYQRGGEGVSSAGRPGLLNIGESATQPWLADTWPNSCSNHNDCSMN
CCTAGNGNSDSNLATYSRPADCIANYNSQMENKQTNLMVPESGVYGDIDLSNKINEMKTF
NSPNLKDGRFVGPGGQPTPYATTQLIQSSIMGNNVNSDRGTGGSGGGLMGGGEMNEKHSW
KPTSVQQQKQELASQLQYNIMEQNKLNKDRYRGGDGPMPATIPYNQTHDSHTGGSYNSSD
RGSSSTSGSQGQKKGVRTPKLPKQSTMNWADLLPPPPANPPPSRSAEEYSLSMEESCEPD
MQCPMPPSHMYLQPDELEEEEEMERGPTPPIRGAASSPAAVSYSHQSTATLTPSPQEEMQ
PMLQDALDSHERRRHTVSPPAPPRPHSPSHTYGYITSPLALDTDGMEEEEEDDILEEEEE
EGDETDAEVAKMHYHHTHPHTHPHHPQMHPRRLLLRGLEQTPASSMGDLESSVTGSMING
WGSASEEDNVSSGRSSAVSSSDGSFFTDADFAQAVAAAAEYSGIRVATYPNTLGHEVAGA
SARKYQINPPSHRPGSPVSTDSNMSMAAVHRRPPKKQKQHPAGHPAGHPAGHPGNQRREA
YNEDLPPPPIPPPAGLKSPTHPSKAVLDGRGVISPKAGEGRDKRGGTGGYRPREGSDPRN
SSSERKDPQERQKTAHGGKGNKHEGSSANKARQHPGSEDILPYSRPQFPTVNSPRDPSSS
SSMSSRGSGGRRRGEGGRRNPADMGLNTTGAFQPGDEELEMVES
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctccaacttctattggatttgtacttttgttaggagttgtccatgtgtgttca
ggatcccgtctgcgccaagaggacactgcaccccggatagtggagcatccatctgacctg
attgtctccaagggggagcccgccactctcaactgcaaagcggaggggcggccgaccccg
acagtggagtggtacaaggatggagagcgggtggaaacggacagggacaatccccgttct
cagcgcatgctgctaccaagcggctccctcttctttctacgcatcgtccacggacgacgg
agcaaaccggacgaaggctcctatgtctgtgttgcccgcaactacctgggagaggcagtg
agccacaacgcctcgctggaagtagccattctacgtgatgacttcagacaaaaccctgca
gatgtgattgtggcagcaggagagccggcggtgctggagtgtcagcctccacgtggacat
cccgaacccacgatatcatggaaaaaagatggaacaaatatcgacgaccgagatgagaga
atcactatacgcggagggaagctgatgatcacaaatgcccggaagagtgacgctgggaag
tatgtgtgcgtcggcacaaacatggtcggagaacgtgaaagtgaaatcgctgaacttaca
gtgcttgagcgtcccagctttgtacgtcgcccgagcagccaggtggtgttagtggaccaa
agtgtagagttcaggtgtgaggcccgtggtgacccagttcccaccgtgcgctggaggaaa
gacgacggtgacctgcccaaaggaagatacgagattcgtgaggaccacaccctgaagatc
cgccgtctgacctcagctgatgtcggctcttactcctgcgtggtggagaacatggtgggc
aaggcggaggcatcggccacgctcaccgtccacgtcatgtctgtgcccccggcatttgtg
gtgagaccaaggaaccaggtggttggggttggcagaactgtcaccttccagtgcgaggcc
accggaaaccctcagccagccattttctggcagcgggaaggcagtcagaacctgctcttc
tcctaccaacctcctcaaccctccagtcggctttctgtatctcagtctggggacctgacc
atcactgatgctgagcgctcagacatgggatactacagctgccaggccatcaacacagct
ggcagtgtcctcaccaaggctctgctggagatcactgatgttatctcggaccgcccgcca
ccagttatccgtcagggcccaaccaatcaaacggtagctgtggacggcacagtggtcctc
aactgtatggcaaccggaaaccccacccccaccatcctgtggaggaaggatggtgtcttg
gtatccacacatgactccagggtcaaacagctggacacgagtgcgttgcagatacgctat
gcaaaacttggtgacactggtacctacacctgcatcgcctccacccccagtggagaggcc
tcatggaaagcctacttagaggtccacgagtttggagttccagtccagccaaacaggcct
actgacccaaacctgatccccagtgccccttccaaacccgaagtcactgatgttacccgg
acctccatctccctttcctggagacctaaccttaatgctggagccacacccacctcctat
ataatagaggccttcagtcatgcatcaggaagcagctggcagaccttggcagagcatgtg
aaaactgaatcatttgtactgaagggcttgaagccgagtgcagtctacctcttcctagta
cgggcagccaatgcctatgggctgagtgatcccagtccaatcactgaatctgtgaaaaca
caagatatccctccgaccagtcagggtgtcgaccatcgacagatccaaacggagttggga
gaagtgctcatccacctgcacaaccccaccattctctcctcttcttctgtcagagtgcag
tggacagtggagcaacagtcacagtacatccagggctacaaggtgatgtacaggccttca
ccagaggggctgcagaggagcgaatgggctgtgttcgaggtgcggacccctggagaggac
agcgccgttgtgccgcagcttcggaaaggagtcgcgtatgaattcaaaatccgccccttc
ttcaatgaattccagggaacagacagtgatgtaaaaattggcaagacgctggaggaagcc
cccagtgcccctcctcgcgaggttacagtggcggagagcggggacaatgggaccgccatc
gtggtctcctggcaaccccctccagaagaggagcagaatggggtggtccaggagtacaag
atttggtgcttggggaatgagagcaggttccatatcaaccgtacagttgacggctcggcc
ttatccgtgctgattcccagtctggccccagggatccgctacagtgtggaggtagcagcc
agcaccggggcgggtccaggggtcaagagcgatatcaccttcttccagctcgatgcgtct
gggcgaatgacagagaccgtggaccaggagaaccccctgtcccagcagatctcagatgtg
gtcaagcagccggcctttatagccggcataggagccgcttgctggatcatcctcatggtc
ttcagcatctggttgtacagacacaggaagaagaggaatggcctctccagcagctatgca
ggcatccgcaaggtgccatcctttactttcacaccaacagtggcataccagagaggagga
gaaggtgttagcagcgctggaaggcctggattgctaaacattggggaatctgccactcag
ccctggctggcagacacatggcccaactcctgctccaaccacaatgactgcagcatgaac
tgctgcactgccggcaacggcaacagcgacagcaacttggcaacgtacagccgcccagcc
gactgcatcgccaattataacagccagatggaaaacaagcagaccaacctcatggtgcca
gagtcaggagtctatggagacattgacttgtccaacaagatcaatgagatgaagaccttt
aacagtccaaacctgaaagatggccgctttgtgggtccagggggccagccgacaccgtac
gccaccacccagctcatccagtcctccatcatgggaaacaacgttaactcagacagagga
accggagggagtggaggaggactcatgggtggaggagagatgaatgaaaaacacagctgg
aagcccacctcagttcagcagcagaaacaggaattggcctcccagctacagtacaacatc
atggagcaaaacaagctgaacaaggaccgctacagagggggcgacggcccaatgccagcc
accatcccctacaaccagacccatgacagccacactgggggctcctacaacagctccgac
cgaggcagcagtagcacctccggaagtcagggtcagaagaaaggcgtgcgcacccccaaa
ctacccaaacagagcacaatgaattgggctgaccttttgccccctccccctgcaaaccca
cctccaagccggagcgcagaggagtactccctgtcgatggaagaaagctgtgaaccagac
atgcagtgccccatgcccccctctcacatgtacctgcagcctgatgagctggaggaggaa
gaggagatggagaggggccccactcctcctatccgaggggcggcctcttcccctgcagct
gtatcttacagtcaccagtctacagccacactcaccccctcaccccaggaggagatgcag
ccaatgctccaggacgcacttgacagccatgaacgcagacgccacactgtgagcccccca
gcccctccaaggccccactctccttcacacacatatgggtacatcaccagcccattggcc
ttggacactgatggtatggaggaggaagaggaggatgatatattggaggaagaggaggag
gaaggtgatgagacagatgcagaggtggccaagatgcactaccaccacacccacccccac
acacacccccaccatccccagatgcaccctcgaaggttgctgctgcgagggcttgaacag
acgcctgcgtccagcatgggcgacctggaaagctcggtgaccggctccatgatcaacgga
tggggttccgcttctgaagaggataatgtctcttcagggaggtccagtgccgtcagctca
tcagacggatcattcttcactgatgctgactttgctcaagcggtggctgcagctgcagag
tattcaggcatcagggtggccacatatcccaacacactgggccacgaagttgcaggagct
tccgcacgaaaataccaaataaacccgccgagccaccgtcctggaagcccggtgtccaca
gacagtaacatgagtatggcagctgtacacaggaggcctccgaagaagcagaaacagcat
cctgcaggtcatcctgcaggtcatcctgcaggtcatcctgggaaccagcgacgtgaagcc
tataatgaagatctcccacctccgcccatcccacctccagccgggcttaagtcgcctaca
cacccctccaaggcagtgctggatggccggggagtgatttcccccaaagcaggagaggga
cgagacaagagaggtggaacggggggttatcggcccagagagggctcggaccctagaaac
agctcatctgaacgcaaagaccctcaagagagacaaaagactgctcatggagggaaaggg
aataaacatgagggtagcagcgccaacaaggcacggcaacacccaggttcagaggacatt
ctgccctatagccgaccacagttccccacagtcaacagcccccgggacccaagctcttcc
agctccatgtcctcgaggggctcagggggtcggcgaagaggagaaggaggccgcaggaac
cctgcagacatgggccttaacaccacaggggccttccaaccaggagatgaagagcttgag
atggtagaaagctga
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integrated database retrieval system