KEGG   Cyclopterus lumpus (lumpfish): 117741944
Entry
117741944         CDS       T09199                                 
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04382  Cornified envelope formation
clum04510  Focal adhesion
clum04512  ECM-receptor interaction
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117741944 (col4a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117741944 (col4a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117741944 (col4a3)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    117741944 (col4a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117741944 (col4a3)
   00536 Glycosaminoglycan binding proteins [BR:clum00536]
    117741944 (col4a3)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117741944 (col4a3)
Glycosaminoglycan binding proteins [BR:clum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117741944 (col4a3)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117741944
NCBI-ProteinID: XP_034405122
LinkDB
Position
13:20849330..20891142
AA seq 1667 aa
MEAPGGPRRSIAPLLVVLLCCTAAPGHAERACHCSGKSLCHCDGVKGQKGESGFFGYEGL
PGVIGYPGNEGHQGPAGEKGDQGTAGGSGLKGSRGLPGKPGFPGPPGLPGLHGHEGAIGL
PGLPGCNGTKGDVGYQGSSGAAGHTGLQGRPGLQGAKGHTFVFPPTPDIKGATGPEGRDG
EHGLNGDPGEPGLPGPPGSAGLPGSPGFLGLPGEKGQEGPSPVIPGPRGQRGDGGPQGIP
GQKGIKLYAEGPKELKGEPGEVGLKGCPGLPGVAGKPVVKGEKGGRGDPGSLGKPGKDGV
LGELGDQGVPGDRGYLGPPGIEGATGEKGDHGYPGLPGETYFKHRFLKGQRGVPGPHGAH
GVHGEQGLIGFPGLQGEPGVATTGLPGPQGPPGSSGPKGEPGELGLLIFGPPGKTGSPGG
RGVEGEPGEPGIPDFLPGDTGPPGAEGRKGPVGVPGVPGEEGRTGEKGETCSVCSFISGP
AGPPGKPGEPGEDGETGSVGFPGPKGHKGVKGVGGPAGPQGPFGIPGLSGAPGPVGDPGI
MQRVGQKGEEGDQGGPGPPGSEGRDGSPGSMGTKGVLGQKGNPGPLGPKGDRGPLGETGP
RGLMGQVGTPGLPGIGNPGPPGSKGNVGVMGQRGDPGKPGVKGSPGEITTFPGDSGQEGA
KGLSGNPGPEGMTGFPGGPGYVGPRGVKGDEGFSVQGPPGFPGVKGLKGPPGAPGAPSFG
IKGRAGPSGPPGMPGPQGNRGIGFPGQQGQSGPQGEDGSVGPQGNTGPQGSDGAPGPPGQ
DGAPGPKGHSGLDGLPGPVGPFGPCSPGALGHEGERGRTGIIGFTGIRGPKGDRGDHGRP
GLGALGPQGSYGVPGFDGTPGPGGEVGPKGLRGTNGEPGSTGIRGDMGPPGALGGPGEDG
RPGETGRTGPKGQRALDGVSGSQGPQGPQGDRGETGPKGFPTAVEVYGDPGDPGDPGPTG
LTGSEGERGPLGPQGLEGRTGRPGDGGAQGPPGDTGRAGERGPPGPCGLNGDQGEMGRPG
FKGDKGCSGPCGEPGSEGKLGPGGLKGAKGESSPPGPGSKGPPGEKGNPGYSGALGKKGE
PGDIGTFGPPGACGPCGPKGLSGPPGCRGPPGTPGEKGCDGPAGNNGPPGPTGLTGNKGA
PGDPGPAGSRGNQGQDGIPGPPGEKGAMGAPGIGPRGPDGKTGPPGYPGEQGPHGVCGPP
GPHGHGGNLGCPGPPGPPGPPGCVGREGVCIEGSKGENGLPGGRGPKGPAGFRGPPGPPG
PGFKGEKGSKGATGFQGPPGYPGDSGPGGKPGEDRPPGPRGLEGQMGATGVTGPVAMKGD
EGPPGYVGTAGPPGPSGRRGQRGKDVTREVLLLPGDKGSPGTPGLKGEKGPPGAQGIPGG
PGLKGFKGRPGGRGQGGRPGLMGEQGDRGILGSKGAAGAAGALGAKGVRGRSGPCSNAPE
NDGFMFTRHSQNLFVPECPAGSTEMYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTMPF
LFCNTDSTCRYASRNDYSYWLSTDQLLPGSVPLISGDSLKNYISRCTVCEARANVMAIHS
QTSMIPECPSGWDALWLGYSFVMETGVGAEGSGQPLASPGSCLENFRKIPFIECHGRGTC
NYYTDSYSYWLAALNPDDMFSKPKPQTDEGDFPGRLISRCRVCMKQL
NT seq 5004 nt   +upstreamnt  +downstreamnt
atggaggcgccgggcggcccgaggcggagcatcgccccgctgctggttgtactgctctgc
tgcaccgccgctccgggacacgccgagagggcgtgtcactgcagtgggaagtctctctgt
cactgtgacggggtcaaaggtcaaaagggtgaatctggcttcttcgggtatgaagggctt
cctggagtgattggttatcccggtaacgagggccaccagggcccggctggggaaaagggg
gatcagggaacagccggaggttcaggactgaaaggctctcggggtcttccaggtaaacca
ggtttccctggacctccaggactgccgggcctccacggacatgaaggagccatcggtcta
ccaggactcccaggatgcaatgggacaaagggggatgttggttaccaagggtcttctggg
gctgcaggacataccggccttcagggtcgaccaggactacaaggtgcaaagggacacacc
tttgtcttcccccccactccggatattaaaggagcaacaggaccagaaggacgagatgga
gaacatgggctgaatggagatccaggtgaaccaggtctgccaggaccaccaggatccgct
ggacttcctggaagtccagggtttctggggttacccggagaaaagggtcaggaaggtccg
agtccagtgataccaggtccccgtggacagaggggtgatggcggcccacaagggatccct
ggacagaaaggaattaaactgtatgctgaaggacccaaagaactgaagggagaaccagga
gaagttggactaaaaggttgccctggacttcctggagtggcagggaaaccggtggttaaa
ggagaaaagggcgggcgaggtgatcctggctcactaggtaaaccggggaaggatggagtc
cttggcgagctgggagaccagggcgtcccaggggatcgtgggtacctcggtcctccaggt
atcgaaggagccacgggagagaaaggtgaccatggttatccaggtcttccaggagagacg
tattttaaacacagattcctgaagggccagcgtggggtccccgggccccacggagcccac
ggagtccacggagaacaaggcctcattgggttccctggcctgcagggcgagccaggtgtg
gccaccactggtctaccgggcccccaggggccgcccggctcatctggacccaaaggagaa
ccgggagagctggggctcctcatttttgggcccccgggaaagactggaagcccaggaggt
cgtggagttgaaggagaaccaggagaacctgggataccagacttcctgccgggagatacg
ggtcctcctggagctgaaggtcgaaaaggcccggtgggggtccctggagtcccaggggag
gaaggacggacaggtgaaaagggggagacgtgttcggtctgttcgtttatttctggcccc
gcgggccctccaggtaaaccaggagagccaggtgaagacggggagacaggatccgtcggt
tttccaggacccaaaggtcacaaaggggtcaaaggtgtcggaggaccagctggtccacag
gggccctttggtatccctggcctctcgggggccccaggaccagttggggaccccgggatc
atgcagagggttgggcaaaagggtgaggagggggaccaggggggaccaggaccaccaggc
tcagaagggagagacggatctccaggatccatgggaacgaaaggggttctgggacagaaa
ggaaacccgggcccgctggggccaaaaggtgacaggggcccactcggggagaccggtccc
agaggacttatgggacaggtgggcactcctggactacctggaattgggaatccaggacct
ccaggatctaaaggcaatgtgggagtcatgggacagcgaggagatcctgggaaaccaggt
gtaaaaggttctccaggtgaaatcacaacctttccaggagattcgggacaggaaggagcg
aaaggtttatctggaaaccccggacctgaaggtatgacagggtttccaggtggtccagga
tatgttggtccaaggggagtaaagggagatgaaggattttccgtccaggggcctccaggc
tttccaggggtcaaaggactcaagggccccccaggagctccaggtgcaccaagttttggt
atcaaaggacgggcggggccatcaggccccccagggatgccgggcccacaggggaacaga
gggatcggtttcccaggccagcagggtcagtctggccctcagggggaagatggctctgtg
gggccccaaggaaacactggaccacaaggatcggatggagctccagggcctccgggacaa
gatggagctcctggacccaaaggccatagtggcctggatggtttacctggtcctgttggt
ccctttggaccgtgttcacctggagctcttggacatgaaggcgagcggggacggacgggc
atcatcggcttcacagggatccggggcccaaagggggaccggggggaccacgggcgacca
ggcctcggggccttggggcctcaggggtcttatggggtacccgggtttgatggaactccg
gggccaggaggagaagttggaccgaagggcctgagagggaccaatggggagccgggaagc
acaggcatcaggggagacatgggtcctccaggggccctcgggggtccaggggaagatgga
agaccaggagagactggacggacaggaccgaaaggtcagagggctctagatggggtcagc
ggttctcaggggcctcaggggccccagggggatcgaggagaaactggaccaaaaggattt
ccgacagctgtggaggtgtatggagaccccggagaccccggagaccctgggcccacagga
ctcacgggtagcgaaggagaaaggggccccctggggccacagggcctcgaagggagaacc
ggtagacccggagatggaggtgcacaaggacctcctggagacaccggcagagctggagag
agaggtcctcctggtccttgtggactcaatggtgaccagggagagatggggaggccgggc
tttaaaggagacaaaggttgttcagggccttgtggggaacctggatcagaaggaaaacta
ggaccagggggacttaaaggtgctaaaggagaatcaagtccacctggacccggatctaaa
ggacctccaggagagaagggaaatccaggatattcaggagcactaggtaaaaaaggggaa
ccaggggacattggaacctttggtcccccaggagcctgtggcccctgtggccccaaagga
ctttctggacccccaggatgcagaggtccacctgggactcctggggaaaagggttgtgat
ggtcctgcggggaacaatggccctccaggacccaccggcctcacaggtaacaagggggct
cctggagatccaggtccggctggttcgagaggaaaccagggacaggacgggatacctgga
cctcctggagagaagggagcaatgggagctcctggaatcgggccccgtggcccagatggg
aagacaggtccacctgggtacccaggggagcagggtcctcatggtgtctgtggtccacct
ggtccccatggtcatgggggaaacctaggctgtcctggtcctcctggacctcctggtcct
cctggttgtgttggcagggagggagtctgcattgaaggaagcaaaggagaaaatggactc
cctggaggacgaggaccaaaaggtccggcaggctttcgtggtcctcctggtcctcctggt
cctggttttaaaggagagaagggatctaaaggagcaacaggtttccaaggaccacctggt
taccctggtgactctggtcctgggggcaaaccgggtgaagacagaccaccaggccctcga
ggacttgaaggccagatgggagccactggtgtcactggacctgttgctatgaagggggac
gagggaccaccagggtacgttggcacagcaggacctccaggaccatctgggaggagaggc
cagagggggaaggacgtaaccagggaggtgctgctgttaccaggagacaaaggctcaccg
ggaaccccaggactcaaaggagaaaaaggacccccaggggcccaagggatacctggaggt
ccaggtttgaagggattcaaagggaggcctggaggacgaggacaaggtggccgtcctgga
ttgatgggggagcagggagaccggggtatcctcggctcaaaaggtgctgcaggtgctgca
ggtgcgctcggtgctaaaggtgttcggggtcggtcgggtccctgcagcaacgcaccggag
aacgacggcttcatgttcaccagacacagccagaacctcttcgtcccagaatgccctgca
ggatctactgagatgtacagtggctactcgctgctgttcatcaacggaaacaaccgagct
cacggacaagacctgggtacactaggtagttgtctacctcgtttcaccaccatgcccttc
ctgttctgtaacaccgacagcacctgtcgctacgcctcccgcaacgactactcctattgg
ctgtccacggaccagctgctgccgggcagcgtgccgctaatctccggggattcactgaag
aattatatcagccggtgtaccgtgtgtgaggccagagccaacgtgatggccatccacagt
cagaccagtatgattccagagtgtccgtcaggctgggacgctctctggttgggatactcc
tttgtcatggaaactggagtgggggcagaggggtcgggtcagcctctggcctcacctgga
tcctgtctggagaatttcaggaagattcccttcatcgagtgtcacggcagaggaacctgc
aactactacaccgactcctacagctactggctggctgctctcaacccagacgacatgttc
agcaaaccgaagcctcagacggatgaaggagacttccctggccgtctgatcagccgctgt
agagtctgcatgaagcagctttga

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