KEGG   Cyclopterus lumpus (lumpfish): 117741957
Entry
117741957         CDS       T09199                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04510  Focal adhesion
clum04512  ECM-receptor interaction
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117741957 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117741957 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117741957 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117741957 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:clum00536]
    117741957 (col4a4)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117741957 (col4a4)
Glycosaminoglycan binding proteins [BR:clum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117741957 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117741957
NCBI-ProteinID: XP_034405139
LinkDB
Position
13:complement(20768043..20848266)
AA seq 1668 aa
MLLTSCSAPCSSTWLWCLLMILSAPPTVLGGEQTEPCGGRDCSTCQCFPAKGARGAPGPL
GQQGPQGPPGFPGPLGTPGQKGQRGDEGPTGAGGLKGDSGSVGVPGFPGLEGIPGHPGPA
GGPGFPGLDGCNGTRGERGDPGLPGGLGPDGEPGLSGPKGFPGDPAVYFVQYPGVPGGVG
SEGLPGRQGDPGLAGLMGVLGPPGLDGANGFPGLPGSRGAPGEKGRSLPGQKGDEGEQGL
QGPPGPFEYVDPPEDLYIKGEKGTQGIEGVCGRQGLPGLDALPGIKGEKGIVGFPGPRGF
FGHSGLPGDRGFTGIRGSPGLPGLIGREGPKGMIGDLGPKGLPQDVDVTHSGDVGGPGAP
GPRGPPGDLGLMGMHGPTGGPGRSIPGPTGVVGQRGGPGSKGDKGDPGQAYRDRPTPGEP
GKPGHPGPRGLKGKQGRPGSYCLPGAPGESGDPGDQGFPGTQGFLGFKGSPGDCSCGPPV
VLRGPPGRVGDSGSPGFPGSLGALGLRGEKGLLGDPGERGHQGLGGFPGVKGFKGQKGDF
TVVDFKGEKGNPGQQGPPGRQGFSGRKGLNGPPGAPGNPGLEGESFASSHGERGFPGHPG
LKGLSGPSGTPGRGVVGAVGQRGDPGDPGPEGLPGPSGPKGVRGDTLPCVPRNPGPPGEK
GDTGDAGYKGLPGPPGFRGITGPDGLKGDKGRPGLLGQPGRQGPSGSVGDTGEEGPEGFS
YGGDPGSAGLPGSSGLRGPAGDSEVGPSGPIGFPGQLGSPGPKGVPGPPGISGLKGVLGL
AGGPGVQGQRGQDGAPGKTGPQGPTSDFCDAGKSGSRGLFGPQGPIGPPGFYGEKGEIGQ
GGLPDYGPKGPQGKPGSSGFPGYTGPQGPPGPGGDSGLLGLSGQTGLMGPRGQDGGPGAP
GQTGALGATGRKGERGSNGRDGGPGCEGRKGEKGCKGALGPPGETKGVPIKGERGTEGPS
GINGFPGPRGNKGVRGAAGKPGYLGINGPTDIVGLLGPPGPYGQPGPSGSPGRTGPPGFI
GFPGETGDQGDLGCPGKVGEPGRQGCTGSKGDKGDSFGCSGPPGDNGPPGDFGPLGPRGP
HGLPGGPGFIGGPGQRGCKGDQGQQGELGPPGVVGPSGPRGRSGLPGLPGNAGADGPPGP
AGFLGLPGPPGPLGLHGLDGLKGVKGDMGTRGLGESGDPGSLGLPGDKGPPGPPGHIGSS
QHGPPGPRGPPGPKGPQGDLGPPGKPGPDCKGPIPGTLGDPGPTGIDGEPGCSGEVGDPG
QNPPVPGDDGDNGDTGCQGPGGLQGPQGPEGLPGITGNPGLKGLRGSSGLMGLPGNRGPR
GCTGPGGPPGPKGSTGPVGPKGEMGRVSSCPTYPPATPGPPGPPGSPGLDGDVGVQGEIG
RIGPKGKKGDIGFEGPSGPEGPDGPDGGRGEPGRPGESGVVGAQGDPGPMGDRGPRGPTK
NLNSGFLLVLHSQSKAVPSCPLDMKVLWVGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVGGASIEDHISRCVVCEAPSSPVALHSQ
TSGQPDCPPNWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLADFRAQPFVECQGPRGTC
HYFANIYSFWLTRVETTASELDHGASTTLTEGWQQRESIGRCSVCMRE
NT seq 5007 nt   +upstreamnt  +downstreamnt
atgctgctgacttcctgctctgccccctgcagctccacctggctctggtgcctcctgatg
atcctgtcggctcctccaacagttctcgggggcgagcagaccgagccgtgcggcggcagg
gactgctccacctgccagtgtttcccagccaaaggagcaaggggggctccaggtcctctg
ggtcagcagggccctcagggccccccaggcttcccgggccctctggggacaccaggccag
aagggccagagaggagacgagggtccaacaggagccggaggactgaaaggagactcggga
agcgtcggcgttccaggttttccaggtttagaaggaatcccgggtcacccgggtcctgct
ggaggtcctggttttccaggtctggatggatgtaacggaaccagaggggagagaggagac
cctggtcttcctggaggactaggacctgatggggaaccgggtttgtcaggaccgaagggg
tttccaggagatccagccgtgtacttcgttcagtaccctggagtacctgggggcgtcggc
tctgaaggacttcctggtcggcagggggatccgggtctcgctggtctgatgggggttctg
ggtcctccaggactcgacggggccaacggtttccctggtctgcctggctccaggggcgca
ccgggagaaaaaggtcgatctctgccgggccagaaaggagacgagggggagcagggcctc
caggggccaccggggccgtttgagtacgtcgaccctccagaagacctgtacatcaaagga
gaaaagggtactcaagggattgaaggagtctgtggaaggcaaggactgccgggtttagac
gctctcccagggatcaaaggagaaaaagggattgtgggatttcctggtcccagaggattc
tttggtcactctggtctgcccggcgacagaggattcacgggcattcgaggaagtccaggt
ctcccaggtctgattggacgagagggtccgaagggcatgataggagatctgggtccgaaa
ggcctccctcaggacgtggacgtcacacactcgggtgacgttggaggccccggggcccct
ggaccaaggggccctccaggagacctggggctgatgggaatgcacggccccaccggaggc
cccggccgatccatacctggtccgacaggtgttgtgggtcagaggggtggtccaggatcc
aaaggggacaaaggagatccaggtcaggcttatagagacagacccacacctggagaacct
gggaaaccaggacatcctggacccagaggactgaaaggaaagcaggggagaccaggtagt
tactgtcttcccggggccccaggagagtctggagatccaggtgatcagggtttcccgggg
acccaaggcttcctagggttcaaaggtagtcctggcgactgttcttgcggccccccagtc
gtactgaggggcccccccggccgtgtgggggactcagggtctccagggtttccaggatct
ctaggggccctggggctgagaggagagaaaggtttacttggagacccaggagagcgtgga
catcagggtttgggcggatttccaggtgtcaaagggttcaaaggtcagaagggagatttc
actgtggtggattttaaaggtgagaaaggaaacccgggccagcagggccctccaggcaga
caaggattttcagggaggaaaggactcaatgggcccccaggggcccctggaaaccccggc
ctagagggtgaaagtttcgccagttctcatggagaaaggggcttccctggacatccgggg
ctaaagggcttatcagggccttcaggcacccccgggcgaggtgtagtcggtgcagtagga
caacgtggtgaccctggggacccgggacctgaaggactcccaggcccctcaggaccgaag
ggggtcagaggggacactctaccctgtgtgcccagaaaccccggaccccccggggagaaa
ggagacactggagatgcaggttacaaaggactgcctggtcctccaggttttcgtggcatc
actggacctgatggacttaaaggggacaaaggccggcctggactgcttggacaacctgga
cgacaaggaccttcgggttctgttggtgataccggagaagaaggacctgaaggcttcagt
tatggtggagatccaggttctgcggggctcccgggctcttctggactcaggggcccagca
ggagactctgaagttgggccctcaggacccattggcttcccaggacaactgggctctccg
ggacctaaaggagtccctggcccccccggcatcagtggactaaaaggagtcctgggtctg
gctgggggccccggtgtgcagggccagagaggacaggatggggccccaggtaaaactggc
cctcaggggcccacatctgacttctgtgacgcaggaaaatctggttccaggggccttttt
ggccctcaaggacccatagggcccccaggtttttacggggagaaaggtgagatcgggcag
gggggtcttccagattatggccctaaaggccctcaaggcaaaccaggctcttcaggtttc
ccggggtacacggggccccagggcccccctggtcccggcggagactctggactgctgggg
ctcagtggtcagacaggtctgatggggccgcggggccaggacggagggccaggggcccct
ggacagaccggggccctcggagccacggggaggaagggggagagagggtccaacggacga
gacggaggtccaggatgtgagggtcggaaaggagagaaaggttgtaaaggggccctgggg
cctccaggagagaccaagggtgtccccatcaaaggagagagaggaacagaaggaccctct
ggaatcaacggctttcctggaccacgaggaaataaaggtgtgcgaggagctgctggtaag
ccggggtatctgggcatcaacggacccacagacatcgtaggacttctgggaccacctggg
ccctacggacaaccaggaccttcaggatcgcctggacgtacaggaccaccaggattcatc
ggctttccaggggagaccggagatcagggtgacctgggatgtccaggaaaagttggagaa
cctggtcgccaaggatgtactggatccaaaggtgataaaggagactccttcggttgttct
ggtccacctggagacaacgggcctcctggagactttggacccttaggacctcgcggacct
cacggacttcctggaggacccggttttattgggggtccaggacaaagaggatgcaaagga
gatcaaggccagcagggggaactgggcccaccaggtgtggtcggtccgtcgggtcccaga
ggccgttctggtcttccaggtcttcctggtaatgcgggtgctgatggtcctccaggacct
gcaggcttcctgggacttccaggtcctcctggaccactgggccttcacggactggacgga
ctcaagggagtgaagggggacatggggaccagaggtctgggggaatcgggtgatccaggt
tctcttggtcttccaggggataaaggtcctccaggtcccccgggacacattggttcatca
cagcatggcccaccgggacccagaggccccccaggacccaaaggaccacaaggggatttg
ggacctccaggtaaacctggaccagactgtaaaggtccaatcccagggactcttggagat
cctggtcctactggaatagatggagaaccagggtgttctggtgaggtgggggatccgggt
cagaaccctccagtacctggagatgatggggacaacggggacacagggtgccaggggcca
gggggccttcaaggacctcaggggcccgaaggtctgccaggcatcaccggaaatccggga
ttgaaaggtctgcgggggtcttctggtctgatgggcctacctggtaataggggtcctaga
ggctgtaccggtcccggtgggcctccaggaccaaagggatccactggaccggtgggtcca
aagggggagatgggacgagtctcatcttgccccacttaccctcctgcgacgccaggtcct
ccaggtccccctgggtcccccggtctggatggagatgtcggcgtccagggagaaatcggc
cggataggacccaaaggtaagaagggggacatcgggtttgagggaccatcaggccctgag
gggcctgatggtccagatggaggccgaggagaaccgggccggccgggggagagcggagtc
gtgggagcccaaggtgatcctggtccaatgggtgaccgcggccctcgtggaccaaccaaa
aacttgaactctggcttcttattggtgttgcacagccaatcaaaggcggttccttcctgt
ccactcgacatgaaggtcctgtgggtcggatatagtctgctgtacctggagggccaggag
aaggctcacactcaggatctgggtcaggcggggtcgtgcatgcgggtcttctccacaatg
ccgttctcctcctgcaacatgggaacctgctcctacgccagtcggaacgataaatcctat
tggctgtcaacgacggcggccgtccccagtattccggtgggcggagcctccatcgaagac
cacatcagccgctgcgtggtgtgtgaagccccctcctcacctgtcgctctgcacagccag
acctctggccagccagactgcccccccaactggaggagcctgtggaccggatactctttc
ctcatgcacacgggagccggcgacgagggcggcggccagtctctgacatcatctggcagc
tgcctggcggacttcagggcccagcccttcgtcgagtgccaggggccccgaggaacctgc
cactacttcgccaacatctacagcttctggctgacgcgggtggagacgacggcctccgag
ctcgaccacggtgcctccaccacgctgacggagggctggcagcagagggagagcatcggg
aggtgcagcgtctgcatgagggaatga

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