KEGG   Cyclopterus lumpus (lumpfish): 117741957
Entry
117741957         CDS       T09199                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum04382  Cornified envelope formation
clum04510  Focal adhesion
clum04512  ECM-receptor interaction
clum04518  Integrin signaling
clum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:clum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117741957 (col4a4)
   04518 Integrin signaling
    117741957 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117741957 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117741957 (col4a4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    117741957 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:clum04147]
    117741957 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:clum00536]
    117741957 (col4a4)
Exosome [BR:clum04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   117741957 (col4a4)
Glycosaminoglycan binding proteins [BR:clum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117741957 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 117741957
NCBI-ProteinID: XP_034405139
LinkDB
Position
13
AA seq 1668 aa
MLLTSCSAPCSSTWLWCLLMILSAPPTVLGGEQTEPCGGRDCSTCQCFPAKGARGAPGPL
GQQGPQGPPGFPGPLGTPGQKGQRGDEGPTGAGGLKGDSGSVGVPGFPGLEGIPGHPGPA
GGPGFPGLDGCNGTRGERGDPGLPGGLGPDGEPGLSGPKGFPGDPAVYFVQYPGVPGGVG
SEGLPGRQGDPGLAGLMGVLGPPGLDGANGFPGLPGSRGAPGEKGRSLPGQKGDEGEQGL
QGPPGPFEYVDPPEDLYIKGEKGTQGIEGVCGRQGLPGLDALPGIKGEKGIVGFPGPRGF
FGHSGLPGDRGFTGIRGSPGLPGLIGREGPKGMIGDLGPKGLPQDVDVTHSGDVGGPGAP
GPRGPPGDLGLMGMHGPTGGPGRSIPGPTGVVGQRGGPGSKGDKGDPGQAYRDRPTPGEP
GKPGHPGPRGLKGKQGRPGSYCLPGAPGESGDPGDQGFPGTQGFLGFKGSPGDCSCGPPV
VLRGPPGRVGDSGSPGFPGSLGALGLRGEKGLLGDPGERGHQGLGGFPGVKGFKGQKGDF
TVVDFKGEKGNPGQQGPPGRQGFSGRKGLNGPPGAPGNPGLEGESFASSHGERGFPGHPG
LKGLSGPSGTPGRGVVGAVGQRGDPGDPGPEGLPGPSGPKGVRGDTLPCVPRNPGPPGEK
GDTGDAGYKGLPGPPGFRGITGPDGLKGDKGRPGLLGQPGRQGPSGSVGDTGEEGPEGFS
YGGDPGSAGLPGSSGLRGPAGDSEVGPSGPIGFPGQLGSPGPKGVPGPPGISGLKGVLGL
AGGPGVQGQRGQDGAPGKTGPQGPTSDFCDAGKSGSRGLFGPQGPIGPPGFYGEKGEIGQ
GGLPDYGPKGPQGKPGSSGFPGYTGPQGPPGPGGDSGLLGLSGQTGLMGPRGQDGGPGAP
GQTGALGATGRKGERGSNGRDGGPGCEGRKGEKGCKGALGPPGETKGVPIKGERGTEGPS
GINGFPGPRGNKGVRGAAGKPGYLGINGPTDIVGLLGPPGPYGQPGPSGSPGRTGPPGFI
GFPGETGDQGDLGCPGKVGEPGRQGCTGSKGDKGDSFGCSGPPGDNGPPGDFGPLGPRGP
HGLPGGPGFIGGPGQRGCKGDQGQQGELGPPGVVGPSGPRGRSGLPGLPGNAGADGPPGP
AGFLGLPGPPGPLGLHGLDGLKGVKGDMGTRGLGESGDPGSLGLPGDKGPPGPPGHIGSS
QHGPPGPRGPPGPKGPQGDLGPPGKPGPDCKGPIPGTLGDPGPTGIDGEPGCSGEVGDPG
QNPPVPGDDGDNGDTGCQGPGGLQGPQGPEGLPGITGNPGLKGLRGSSGLMGLPGNRGPR
GCTGPGGPPGPKGSTGPVGPKGEMGRVSSCPTYPPATPGPPGPPGSPGLDGDVGVQGEIG
RIGPKGKKGDIGFEGPSGPEGPDGPDGGRGEPGRPGESGVVGAQGDPGPMGDRGPRGPTK
NLNSGFLLVLHSQSKAVPSCPLDMKVLWVGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGTCSYASRNDKSYWLSTTAAVPSIPVGGASIEDHISRCVVCEAPSSPVALHSQ
TSGQPDCPPNWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLADFRAQPFVECQGPRGTC
HYFANIYSFWLTRVETTASELDHGASTTLTEGWQQRESIGRCSVCMRE
NT seq 5007 nt   +upstreamnt  +downstreamnt
atgctgctgacttcctgctctgccccctgcagctccacctggctctggtgcctcctgatg
atcctgtcggctcctccaacagttctcgggggcgagcagaccgagccgtgcggcggcagg
gactgctccacctgccagtgtttcccagccaaaggagcaaggggggctccaggtcctctg
ggtcagcagggccctcagggccccccaggcttcccgggccctctggggacaccaggccag
aagggccagagaggagacgagggtccaacaggagccggaggactgaaaggagactcggga
agcgtcggcgttccaggttttccaggtttagaaggaatcccgggtcacccgggtcctgct
ggaggtcctggttttccaggtctggatggatgtaacggaaccagaggggagagaggagac
cctggtcttcctggaggactaggacctgatggggaaccgggtttgtcaggaccgaagggg
tttccaggagatccagccgtgtacttcgttcagtaccctggagtacctgggggcgtcggc
tctgaaggacttcctggtcggcagggggatccgggtctcgctggtctgatgggggttctg
ggtcctccaggactcgacggggccaacggtttccctggtctgcctggctccaggggcgca
ccgggagaaaaaggtcgatctctgccgggccagaaaggagacgagggggagcagggcctc
caggggccaccggggccgtttgagtacgtcgaccctccagaagacctgtacatcaaagga
gaaaagggtactcaagggattgaaggagtctgtggaaggcaaggactgccgggtttagac
gctctcccagggatcaaaggagaaaaagggattgtgggatttcctggtcccagaggattc
tttggtcactctggtctgcccggcgacagaggattcacgggcattcgaggaagtccaggt
ctcccaggtctgattggacgagagggtccgaagggcatgataggagatctgggtccgaaa
ggcctccctcaggacgtggacgtcacacactcgggtgacgttggaggccccggggcccct
ggaccaaggggccctccaggagacctggggctgatgggaatgcacggccccaccggaggc
cccggccgatccatacctggtccgacaggtgttgtgggtcagaggggtggtccaggatcc
aaaggggacaaaggagatccaggtcaggcttatagagacagacccacacctggagaacct
gggaaaccaggacatcctggacccagaggactgaaaggaaagcaggggagaccaggtagt
tactgtcttcccggggccccaggagagtctggagatccaggtgatcagggtttcccgggg
acccaaggcttcctagggttcaaaggtagtcctggcgactgttcttgcggccccccagtc
gtactgaggggcccccccggccgtgtgggggactcagggtctccagggtttccaggatct
ctaggggccctggggctgagaggagagaaaggtttacttggagacccaggagagcgtgga
catcagggtttgggcggatttccaggtgtcaaagggttcaaaggtcagaagggagatttc
actgtggtggattttaaaggtgagaaaggaaacccgggccagcagggccctccaggcaga
caaggattttcagggaggaaaggactcaatgggcccccaggggcccctggaaaccccggc
ctagagggtgaaagtttcgccagttctcatggagaaaggggcttccctggacatccgggg
ctaaagggcttatcagggccttcaggcacccccgggcgaggtgtagtcggtgcagtagga
caacgtggtgaccctggggacccgggacctgaaggactcccaggcccctcaggaccgaag
ggggtcagaggggacactctaccctgtgtgcccagaaaccccggaccccccggggagaaa
ggagacactggagatgcaggttacaaaggactgcctggtcctccaggttttcgtggcatc
actggacctgatggacttaaaggggacaaaggccggcctggactgcttggacaacctgga
cgacaaggaccttcgggttctgttggtgataccggagaagaaggacctgaaggcttcagt
tatggtggagatccaggttctgcggggctcccgggctcttctggactcaggggcccagca
ggagactctgaagttgggccctcaggacccattggcttcccaggacaactgggctctccg
ggacctaaaggagtccctggcccccccggcatcagtggactaaaaggagtcctgggtctg
gctgggggccccggtgtgcagggccagagaggacaggatggggccccaggtaaaactggc
cctcaggggcccacatctgacttctgtgacgcaggaaaatctggttccaggggccttttt
ggccctcaaggacccatagggcccccaggtttttacggggagaaaggtgagatcgggcag
gggggtcttccagattatggccctaaaggccctcaaggcaaaccaggctcttcaggtttc
ccggggtacacggggccccagggcccccctggtcccggcggagactctggactgctgggg
ctcagtggtcagacaggtctgatggggccgcggggccaggacggagggccaggggcccct
ggacagaccggggccctcggagccacggggaggaagggggagagagggtccaacggacga
gacggaggtccaggatgtgagggtcggaaaggagagaaaggttgtaaaggggccctgggg
cctccaggagagaccaagggtgtccccatcaaaggagagagaggaacagaaggaccctct
ggaatcaacggctttcctggaccacgaggaaataaaggtgtgcgaggagctgctggtaag
ccggggtatctgggcatcaacggacccacagacatcgtaggacttctgggaccacctggg
ccctacggacaaccaggaccttcaggatcgcctggacgtacaggaccaccaggattcatc
ggctttccaggggagaccggagatcagggtgacctgggatgtccaggaaaagttggagaa
cctggtcgccaaggatgtactggatccaaaggtgataaaggagactccttcggttgttct
ggtccacctggagacaacgggcctcctggagactttggacccttaggacctcgcggacct
cacggacttcctggaggacccggttttattgggggtccaggacaaagaggatgcaaagga
gatcaaggccagcagggggaactgggcccaccaggtgtggtcggtccgtcgggtcccaga
ggccgttctggtcttccaggtcttcctggtaatgcgggtgctgatggtcctccaggacct
gcaggcttcctgggacttccaggtcctcctggaccactgggccttcacggactggacgga
ctcaagggagtgaagggggacatggggaccagaggtctgggggaatcgggtgatccaggt
tctcttggtcttccaggggataaaggtcctccaggtcccccgggacacattggttcatca
cagcatggcccaccgggacccagaggccccccaggacccaaaggaccacaaggggatttg
ggacctccaggtaaacctggaccagactgtaaaggtccaatcccagggactcttggagat
cctggtcctactggaatagatggagaaccagggtgttctggtgaggtgggggatccgggt
cagaaccctccagtacctggagatgatggggacaacggggacacagggtgccaggggcca
gggggccttcaaggacctcaggggcccgaaggtctgccaggcatcaccggaaatccggga
ttgaaaggtctgcgggggtcttctggtctgatgggcctacctggtaataggggtcctaga
ggctgtaccggtcccggtgggcctccaggaccaaagggatccactggaccggtgggtcca
aagggggagatgggacgagtctcatcttgccccacttaccctcctgcgacgccaggtcct
ccaggtccccctgggtcccccggtctggatggagatgtcggcgtccagggagaaatcggc
cggataggacccaaaggtaagaagggggacatcgggtttgagggaccatcaggccctgag
gggcctgatggtccagatggaggccgaggagaaccgggccggccgggggagagcggagtc
gtgggagcccaaggtgatcctggtccaatgggtgaccgcggccctcgtggaccaaccaaa
aacttgaactctggcttcttattggtgttgcacagccaatcaaaggcggttccttcctgt
ccactcgacatgaaggtcctgtgggtcggatatagtctgctgtacctggagggccaggag
aaggctcacactcaggatctgggtcaggcggggtcgtgcatgcgggtcttctccacaatg
ccgttctcctcctgcaacatgggaacctgctcctacgccagtcggaacgataaatcctat
tggctgtcaacgacggcggccgtccccagtattccggtgggcggagcctccatcgaagac
cacatcagccgctgcgtggtgtgtgaagccccctcctcacctgtcgctctgcacagccag
acctctggccagccagactgcccccccaactggaggagcctgtggaccggatactctttc
ctcatgcacacgggagccggcgacgagggcggcggccagtctctgacatcatctggcagc
tgcctggcggacttcagggcccagcccttcgtcgagtgccaggggccccgaggaacctgc
cactacttcgccaacatctacagcttctggctgacgcgggtggagacgacggcctccgag
ctcgaccacggtgcctccaccacgctgacggagggctggcagcagagggagagcatcggg
aggtgcagcgtctgcatgagggaatga

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