Cyclopterus lumpus (lumpfish): 117742006
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Entry
117742006 CDS
T09199
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117742006 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117742006 (ddx6)
03036 Chromosome and associated proteins [BR:
clum03036
]
117742006 (ddx6)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117742006 (ddx6)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117742006 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
117742006 (ddx6)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117742006 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117742006
NCBI-ProteinID:
XP_034405219
Ensembl:
ENSCLMG00005005594
LinkDB
All DBs
Position
13:complement(11933580..11946600)
Genome browser
AA seq
481 aa
AA seq
DB search
MSTARTETPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQQQLNQMKGTINNGNAQLAPTT
NAVIKPGDDWKKSLKLPPKDTRMKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPI
QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAMVIVPTRELALQVSQ
ISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQM
VVLDEADKLLSQDFVVMMEEMLGFLPKRRQILLYSATFPISVQKFMNAHLQKPYEINLME
ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI
GRSGRFGHLGLAINLITYDDRFNLKGIEEQLRTEIKPIPGIIDKSLYVAEYHSESGEEVK
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgccaggaccgagaccccagtgattttgggcttgtccaaccaaaatggacag
cttagaggctcagttaagcctgctggagcaccaggtggaggtggaggaggccctcaacag
caacttaatcagatgaaaggcacaatcaacaatggtaacgctcaactggccccaacaact
aatgctgtcatcaagcccggagatgactggaagaaaagtttgaagttgcccccaaaagac
acaaggatgaaaacttcggatgtgacttcaactaaaggcaacgagtttgaagattattgc
ctaaagagggagctgctcatgggaatctttgagatgggctgggaaaagccatctccaatc
caggaggaaagcattcccattgcactgtcaggaagggatatcttggcaagagccaaaaat
ggcacgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaagaga
gactgcatacaagctatggtcatagtgcccaccagagaactggctctgcaagtaagccaa
ataagtatccaggtcagcaaacacatgggtggagtaaaggtaatggcaaccacaggtgga
accaacctacgtgatgacatcatgagacttgatgaaacggtacatgtgatcattgccact
cctgggagaattttagacctcatcaagaaaggagtggccaaagtcaatcaagtgcagatg
gtcgttctggatgaagctgacaagctcctgtctcaggactttgtggttatgatggaggaa
atgctgggcttcctgcccaaacggaggcaaatcttgctttattctgcaaccttccctatc
agcgttcagaagtttatgaatgcacacttgcagaaaccctatgagatcaacctgatggag
gagctgacactcaagggtgtgactcagtattatgcttatgtgactgaaaggcaaaaagtc
cattgccttaacaccttgttctccaggctccagatcaaccagtcaataatcttctgcaac
tcctcgcagagagtggaactcctcgccaagaagatctcccagcttggttattcatgtttc
tacattcatgccaagatgagacaggagcatcgcaaccgtgtgttccacgacttcagaaac
ggtctctgccggaatcttgtctgcactgacctcttcacaagaggaattgacattcaagct
gtgaatgttgtgattaattttgattttcctaagctgggagaaacataccttcatcgcatt
gggagatctggccgctttggacacttgggtctagccattaacctcatcacttacgatgat
cgcttcaacctgaaggggattgaggagcagctcagaacagagatcaagcccatccctggc
atcatcgacaagagcctatacgtggcagagtaccacagtgagagtggcgaagaagtcaag
ccttga
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