Cyclopterus lumpus (lumpfish): 117742317
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Entry
117742317 CDS
T09199
Symbol
zgc:163098
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein
KO
K12842
U2-associated protein SR140
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117742317 (zgc:163098)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117742317 (zgc:163098)
Spliceosome [BR:
clum03041
]
Complex A
U2 snRNP components
U2 related factors
117742317 (zgc:163098)
Complex B
117742317 (zgc:163098)
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Paralog
GFIT
Motif
Pfam:
Surp
cwf21
RRM_1
CID
CTK3
SET_assoc
Motif
Other DBs
NCBI-GeneID:
117742317
NCBI-ProteinID:
XP_034405378
Ensembl:
ENSCLMG00005013287
LinkDB
All DBs
Position
14:complement(9110960..9121234)
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AA seq
880 aa
AA seq
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MADRKGKPVTLIKTLSKKEQDGLKKKEEEKAAEVFEEFLASFETNEKSGVKTFVRGGIVN
ATKEEEAAEVKKNKLYRPAGKFVPVSQHGSPVSSAESKKSTFKKKTDEKKKSNLELFKEE
LKLIQEEREERYKRKKNDTGGGGGGGGFGELDTPLSGRSALYDDLTVPTTTNLYISCISP
KMNEEILCKEFGKYGPLASVKIMWPRTDEERLRTSNRAFVAFMTRKDAERALSSLDGKLI
MGFEMKLGWGKPARIPPQPLYTPVGVRATPPPQSGLPFNAQPRDRFRNDFTKPLGMSKGE
LDKTLSEAVVKVVIPTERNLLFLIHRMIEFVVREGPVFEAVIMNKEKSNPDYRFLFNNKS
QDHVYYRWKLFSILQGQSPTEWRTADFRMFRGGSMWRPPIINNYSERDEDQADVEEDVPP
EEEVKKGQLRSEHKLRLETLLKELTPSRDDVANAMLFCLERADAAEEVVGHITESLSLLQ
TPLQKKIARLYLVSDILHNSCAKVAGASYYRKYFETKLTQIFGDLNAAHKNIQARLQAEQ
FKQKVTSCFRAWEDWAIYPEPYLIHLQNIFLGFAKAVEELKETSEEVSSFIDGAPMENAP
RDGLPLHRAPVDDLDGCPLGWDPLDGVPVDDIDGVPLGVAIDDIDGMPLEESNIPLSRVP
LSKWEKTTDTGTFSQAKTESKWDTVVEPNNDDEVTVSVNSKDGEEDSQSDSSDDSSRLSK
YESADFQSSLKSFQMSESKRKRLRELEVKVMKTQDELESGKRQRKSGMSIQQQVEHYRNK
LLQKEFEKDDEKTEKKSKDKSKDDRRDKDRSKRSEDGVRRRGWSRDPDDHSRKSRSISPS
KTRSPKWSKRSRSPSPDRRTGKSRSRSPHRSHKKAKKSKH
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcagatagaaaaggaaaacctgtcactctgatcaaaacactctcaaagaaagaacaa
gacgggctcaagaaaaaggaggaagaaaaagcagcagaggtttttgaagaattcttggca
tcatttgagaccaacgagaagagcggagtgaaaacttttgtccgaggggggattgtgaat
gctactaaagaggaggaagcagcagaggtcaagaaaaataagctgtatcgaccggctggc
aagtttgtccctgtgtcccagcatggctcaccagtatcatctgctgaaagcaaaaagtct
acgtttaaaaaaaagacagatgaaaagaagaagagtaatctggaactcttcaaagaagaa
cttaagctgatacaagaagagcgagaggaaagatataaaaggaagaaaaatgacactggt
ggtggtggtggtggaggaggatttggagaactggacacaccgttatcgggacggtccgca
ttatatgatgacctgacggtgccaaccaccactaacctctacattagctgcattagccca
aagatgaacgaggagattctctgcaaagagtttggtaagtacggtcccctggccagtgtg
aagatcatgtggccccgaacagacgaggagcgactcaggacgtccaacagagcctttgtg
gctttcatgacacggaaagatgcagagagagccttgtcttcgcttgatggtaaattgatt
atggggtttgaaatgaagcttggatggggtaaaccagctcggattccacctcagcctctc
tacacaccggtgggggtgagggccacaccgccaccccagtctggtctccctttcaatgct
cagccaagagatcgcttccgcaatgacttcaccaagccgcttggcatgtccaaaggagag
ctcgacaagactctgtccgaagccgtagtcaaagtggttatcccaaccgaaaggaacctc
ctcttcctcattcacaggatgatagagtttgtggtgcgtgaaggccccgtgtttgaagcc
gtaattatgaacaaggagaaaagcaatccagactacaggttcctttttaacaacaaaagc
caagatcatgtgtactaccgctggaaactgttctccatcctgcagggacagtccccgaca
gagtggaggacagcagactttcgtatgttccggggaggctccatgtggagacccccgatc
ataaacaattactctgagagagatgaagaccaggccgatgtggaggaggatgttcctcct
gaggaagaggtgaagaaagggcagctcagatctgagcacaaactgaggctggagacgttg
cttaaagagctcactccaagcagagacgatgtcgccaatgccatgctcttctgtcttgag
cgagcggacgcagcagaggaagtagtgggacacatcactgaatctttatccttgcttcag
acgccccttcagaagaagattgccagattgtatctcgtgtccgatatcttgcacaattca
tgtgccaaagtagccggggcatcatattatcgtaaatattttgaaacgaagctaacgcag
atttttggagaccttaatgcggcgcataaaaacatacaagccaggctgcaggcagaacag
tttaagcaaaaggtcacaagttgttttagagcatgggaagactgggccatatacccggag
ccttatttaatccaccttcaaaacatctttctgggctttgccaaagcagtggaggaattg
aaagagacgtcagaggaagtatcctcctttatagatggtgcgccaatggaaaacgcacca
agagatgggttacctctgcacagagcgcctgtggatgacctcgacggctgccccttaggc
tgggaccctttggatggagtccctgttgatgacatagacggtgttcccttaggggttgcc
attgatgacattgatggaatgcccttggaagagagcaatatccctctctccagagtgcct
ttgtctaaatgggagaagacgactgatactgggacattttctcaagccaagactgagtcg
aagtgggacacggtggtggagccaaacaatgacgatgaagtgactgtaagcgtcaactca
aaagatggagaagaagactcacagagtgacagtagtgatgactccagcagattgtccaag
tatgagagtgcagacttccagagctccctcaaaagttttcagatgtctgagagcaaaagg
aaacggttgagagagctggaggtaaaggtcatgaagacccaagatgagctggaatctggc
aagaggcagaggaagtctggaatgagcatacaacaacaagtggagcactacaggaacaag
ctgctacagaaggagtttgaaaaagatgacgaaaagacagagaaaaagtctaaagacaag
tcaaaagatgaccggagggacaaagacaggagcaaaagaagcgaagacggggtcagacga
cgaggatggagtagagaccccgacgaccacagccggaagtcgaggagcatctccccgtca
aagacaaggtctcccaaatggtccaagcgctcccgatcaccatctccagaccggaggacg
gggaagtcccgttcacggtcgccacatcgctcccacaagaaggcgaagaagagcaaacat
tga
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