Cyclopterus lumpus (lumpfish): 117742361
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Entry
117742361 CDS
T09199
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03030
DNA replication
clum03420
Nucleotide excision repair
clum03430
Mismatch repair
clum03440
Homologous recombination
clum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117742361
03420 Nucleotide excision repair
117742361
03430 Mismatch repair
117742361
03440 Homologous recombination
117742361
03460 Fanconi anemia pathway
117742361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117742361
03032 DNA replication proteins [BR:
clum03032
]
117742361
03400 DNA repair and recombination proteins [BR:
clum03400
]
117742361
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117742361
DNA replication proteins [BR:
clum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117742361
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117742361
MMR (mismatch excision repair)
117742361
DSBR (double strand breaks repair)
HR (homologous recombination)
117742361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
SOG2
IBR
Motif
Other DBs
NCBI-GeneID:
117742361
NCBI-ProteinID:
XP_034405488
Ensembl:
ENSCLMG00005011958
LinkDB
All DBs
Position
14:12843948..12879318
Genome browser
AA seq
663 aa
AA seq
DB search
MSVTLTGGAVEALFDASQADNEHVLQLLDIRRCSSVSGPPRYRLKMSDGQHFLSCFVLAT
QLNNLIEENLLVPNCVCMVKKTINNTLRDGRHVVVVLDMEILKSAEETGGKIGNPTPYNP
TGKTSSSQFSASCSSVPASPPSAAVPGPSYKNNSSHEKGFVGKSPMKASPMKAAPLKASP
LKASPLKASPMKASPMKVSPMKASPMKASPMKASPMKASPTKATSDSPGSSSKVISIAGL
NPYQSNWTIRARVTNKSSIRTWSNSRGEGKLFSFEILDESGEIKITAFNNEVDKFFSLVE
QGKVYYITKATLKVANKQYTTLKNDYEMTLHAHSSIVPCDDSQGIPAVHCDFVPIAELEN
RDKDAIIDVIGVCKSAEDVSRITTKTSKEVSKRALNLIDTTGKVVTVTLWGEEAEKFDGS
RQPVVAVKGARLSDFGGRSLSALFSSTVMVNPDLPEAFSLRAWYDQGGNAIDGQSLTETR
SVGSGSKMNWKTLSDVKNEQLGHGEKADYFSCLATVLYIRKENCLYQACPSADCSKKVID
QQNGLYRCEKCNREFPNFKNRLLLSANLADFGDNQWVTCFQETAEILLGHSAETLGQLRD
TDEAAFDEVFQKTNFTTHLFRNRVKLETYNDESRVKVIVMEVEQVDHREYSRRLLANIRK
LAS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaacactcacaggtggagcagttgaagcgctgttcgacgcctcacaagctgac
aacgaacatgtgctgcagctgctggacatccgtcggtgtagcagtgtttctggtccaccc
aggtaccggctcaagatgagtgatggtcagcactttttgtcttgctttgtgttggccaca
caattaaacaatctgatagaagagaatctcctggtccctaattgtgtgtgtatggtgaag
aagaccatcaacaacacgttgagagatggcaggcatgtggtggttgtgttggacatggag
atattgaaatcggccgaggaaactggagggaagattggaaatccaactccatataatcca
actggtaagacatcatcttcacaattctctgcctcatgttcttctgtcccagcatcccct
ccatctgctgcagtacccggaccctcctataagaacaacagcagccatgaaaaaggtttt
gtgggaaagtctcccatgaaggcgtcacccatgaaggcggcacccctgaaggcgtcaccc
ctgaaggcgtcacccctgaaggcgtctcccatgaaggcgtctcccatgaaggtgtctccc
atgaaggcgtcacccatgaaggcgtcacccatgaaggcgtctcccatgaaggcgtcaccc
acgaaggctaccagtgattctccaggttcttcatcaaaagtaatttctattgcaggccta
aacccctaccaaagcaactggactatcagagcccgagtcaccaacaaatccagcatccgc
acctggagtaactccagaggagagggcaagctcttctcctttgagatattggatgagagt
ggagaaatcaagatcacagccttcaacaacgaagtggacaagtttttctctctagtggag
caaggcaaggtgtactacatcaccaaggctacgctgaaggtggccaacaaacagtacacc
acactgaagaacgactatgagatgaccctccatgctcattcatccatcgtcccatgtgat
gacagtcaaggaatcccagctgtgcactgtgactttgtgcccatcgctgagctggagaac
agagacaaggacgccatcattgatgttattggagtgtgtaagagtgcggaggatgtatcc
cgtattaccactaagaccagcaaggaagtctccaagagggccctcaacctaatagacaca
actggcaaagtggttacggtcacactgtggggagaggaggccgagaagtttgatggctct
cggcagccagtggtcgccgtcaaaggagctcgcttgtctgattttggaggcagatctctc
tctgctttattcagttcaacagtcatggtcaacccagacttaccggaggcatttagtctg
cgggcctggtatgaccagggaggcaatgcgatcgacggccaatccctgacagagacgagg
tcagtgggcagcggatcaaagatgaactggaaaacactgagcgacgtcaagaatgaacag
ttgggacacggagagaaggcggactatttcagctgtctggcgacggtgctgtacattcgt
aaggagaattgtctgtaccaggcctgtccatctgcagactgcagcaagaaggtcatcgac
caacagaacggactgtaccgctgcgaaaagtgcaacagagagttccccaacttcaaaaac
agactcctactttctgccaacttggcagacttcggggataaccagtgggtgacatgcttc
caggagacagctgagatcctgttaggtcacagtgcagaaacactgggacaactcagagac
acagatgaagctgcattcgatgaagtctttcagaaaaccaacttcacaactcacctcttc
agaaacagagtcaagctggagacgtacaacgatgagagtcgggtgaaggtaatcgtcatg
gaagtcgagcaagttgaccacagggaatacagcaggagactgctcgctaacatccgcaaa
ttggccagctga
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