Cyclopterus lumpus (lumpfish): 117742385
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Entry
117742385 CDS
T09199
Symbol
nfrkb
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117742385 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117742385 (nfrkb)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
117742385 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
117742385
NCBI-ProteinID:
XP_034405552
Ensembl:
ENSCLMG00005015781
LinkDB
All DBs
Position
14:9928453..9936365
Genome browser
AA seq
1278 aa
AA seq
DB search
MDALTHILSDPLDPKEEHDEQITEECMLGNCRLNLPEDLLEDPDVFFSVMSASTWSEVLS
DSQRQHLRQLLPQFPDNNVAEQDSTISDIFHNRNFNFGNPLHLAQKQFRDGYFNPEVVKY
RQLCAKSQKKRQLYSLQQYYHRLLKHILVSRKELLEFAVHSGLDFPPKRKLMTKTHAEMR
EPRVRRRLSRILKEVKTECGDSDASSDDDDISLWAPAPQSPSSPTPTVSLRVLPSLSTQD
MKTTEGIELGEQDLKAMLHNHREKRKRQPDHPDLMTSDIHLGDILSRANIGRKGAVAFFD
LSLPKKKIKDERRKKKMRTIKVESEDPCEILAPSDTPSAPTASIINSLPDTPSTPLANIK
EEIVEECPSSPVPVEEIAISFFSLLESILRAENLTSTSLLEEKVQMWQSSPASSLNVWFS
SVPCWSDLVLQALQFLAGETKDGMMALPSGFSPFVEFADESQQWRWIGPTQDTEKDLSAL
CQLWLDSKDFVIKTENEDMLEMTSPTPRVSSTDYVVRPSTGDERQVFQIQEQQRYNQPHK
AFTFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSDRPPYVTILSLVRDAAARLPNGE
GTRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRSR
SQEEFERIHQAQAAAAKARKALQQKPKPASKPKSGSKDGGSKTPGCLEAGQDIVCIPMSP
TRTTPTPNTPGTPKSPLPCTATTPTKTGVTDAIKTSTGVLLVSPPSLPQLGTILPTSQAC
PPVSQPVTSQHTARIVSHLAAGSLPQVRVVSAQPGLGSTLGSQQATLVHQAPHQIRMPVS
MAAKGISQAMVSVPLRSQSASSPVQVPTTISVSAVALTKPLARSPGSPANNPGSPARLQG
VAGPSIKQVSITGQLGIKTAGGGGIPITATNLRIQGKDVLRLPPSSITTDSKGQTVLRIT
PDMMATLAKSPVATVKLTPDFLGTGATGSKSISATLRVAPPHSSPSSVSSAASCTGEIHT
TKAGTVASSLMKAAGDTAIRLMPTLAVTMADQKSRTFSSVSSPDKSGTTIRIMPGLGVIP
QKQGQTITMTTTGSKPLTASTCANVMTMAASVVAGAKGITVAPGVSCSTLTLGTTTATVR
QVPATVVTTQPGKLPARITVPLSLLTQPLKSKSVVTTPMVKGSLNTNISSLGRNIILTTM
PAGTKLIAGNKPVSFVTAQQFQQLQQQGQATQVRIQTVQAQQLQQHMASGSQKSVSTVVV
TTAPSPKCAPDPPTAPQQ
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggatgcccttacccacatactgtcagaccctcttgatccaaaagaagaacacgatgaa
caaatcacagaggaatgcatgctggggaactgtagattaaaccttccagaggacctactt
gaggaccctgacgttttcttctctgtgatgagtgcaagcacctggagtgaagtgctgtca
gattctcagagacagcaccttcgtcagttgttgccacagtttcctgacaacaatgttgca
gagcaggacagcaccatcagtgacattttccacaacagaaactttaactttggaaatccc
cttcatctagcacaaaaacaattcagagatggttacttcaatcctgaggtggtcaagtac
agacaattgtgtgccaagtcccagaagaagagacagttgtactccctccagcagtattac
cacaggcttttgaagcacatccttgtctccagaaaggagctgctagagtttgcggttcac
agtggactggactttccgccgaaaagaaagttaatgaccaagactcatgctgaaatgcgg
gagccacgggtaagaagaagattgagccgcatattaaaggaggtcaaaactgagtgtgga
gacagcgatgcttcatctgatgatgacgacatatcattatgggctccagcaccccaatcg
ccttcctcgccgacacccactgtctcgctcagagttcttcccagcctctccacccaagac
atgaagaccactgagggaatagaactaggggagcaggatttgaaagccatgctgcataac
catcgggagaagaggaagcgacagccagatcatccagacttgatgacctctgacattcat
cttggagacatactttcaagagcgaatattggtcggaagggggctgtggccttttttgat
ctgtctctgcctaagaagaagatcaaagatgagagaaggaagaaaaaaatgaggacaata
aaagtggaatctgaggatccctgtgaaattcttgcaccttcagacaccccatcagctcca
acggcgagcatcatcaattccctgccagacaccccgtctactccactggccaacatcaag
gaagaaattgtggaggagtgtccgagcagcccggttccagttgaggaaatagctatcagt
ttcttcagcttgttggagagcatcttaagggcagaaaaccttacaagcacttcattgttg
gaggagaaggttcaaatgtggcagtcctctccagccagctccctcaatgtgtggttttca
tctgtcccatgttggtctgacttggttcttcaagccctgcagtttcttgcaggagagact
aaagatggtatgatggcactccccagtggattttctccatttgtggaatttgctgatgaa
tctcagcagtggaggtggatcggtcccactcaggatacagagaaggatctcagtgcactc
tgtcagctgtggctggactccaaagactttgttatcaagacggaaaatgaggatatgctc
gagatgacttctcccacaccaagagtcagctcaactgattacgtggtgcggcccagcact
ggagatgagagacaagtgtttcaaattcaggagcagcagcgatacaaccagccacataaa
gccttcaccttcaggatgcacggctttgaatctgtggtggggcctgtgaaaggggtgttt
gataaggagatgtctctcaacaaagccagagagcacacattgctccgctcggaccgacca
ccatatgttaccatcctctctctggtgcgggatgcagcagccaggttaccaaatggagaa
ggaacgagggcagagatctgtgaactgttgaaagactctcagtttcttgctccagatgtc
accagtgcacaggtgaacacggttgtcagtggtgccctggatagacttcactatgagaaa
gacccctgtgtaaagtatgacatcggccgcaagctctggatctacctgcaccgcagtcgc
agtcaagaggagtttgagaggatccaccaggctcaagctgctgctgcaaaagcaagaaaa
gccctgcagcagaaacctaaacctgcatcaaagcctaagtccggaagtaaagacggaggc
agtaaaaccccggggtgtctggaggcaggacaggatatagtctgcattcccatgtcacca
acccgtacaacacccaccccaaacacacctggaacccctaagtcccccttaccctgcacg
gccaccacaccaacaaagaccggagtcactgatgcaatcaaaaccagcacaggtgttctt
cttgtgtcccctccctcgttgccccagctgggaaccatcttacccaccagtcaggcttgt
cccccagtttcacagccggtcacatcccaacacacggctcgcatagtgagtcacctggcg
gcaggctccctccctcaggtacgggtggtttctgctcagcctggtctgggttctacgtta
ggcagtcagcaggccacactggtacatcaggcccctcaccagatcaggatgccagtgtca
atggcagccaagggcatttcacaggcaatggtttctgtgcctctgaggagtcagtctgcc
agtagtccagtccaggtgccaaccaccatatctgtgtccgctgtagctctcaccaaacct
ctagccagatcacctggtagcccggctaacaaccctggttcccctgcaaggctgcaagga
gtcgccggcccaagtatcaaacaggtgtccatcacaggccaattgggaattaagactgct
ggtggaggaggaattccaataactgctacaaacctgcgcatccagggtaaagatgtcctt
cgtcttccaccgtcgtccatcaccacagactccaaaggacagacggtgctgcggatcacc
ccagacatgatggctactcttgccaagtccccagttgcaaccgtcaaactcacgcctgac
tttctgggtaccggcgccaccggcagcaagagcatatcagccactctccgtgtggcacca
ccccactcttcaccttcctctgtttccagtgctgcatcctgtacaggtgaaatacatacc
actaaagcaggcactgttgcttctagcttgatgaaggctgcaggagacacagccatacga
ctgatgcccacattggcggtgactatggctgaccaaaaatcaaggaccttctccagcgta
tcctcccctgacaagagtggcaccaccattcggataatgccaggccttggtgttattcca
cagaaacaaggtcagaccatcacaatgacgaccactggcagtaaaccgctcacagcctcg
acatgtgctaatgtaatgaccatggctgccagtgttgtggctggtgccaaggggattaca
gtggctcctggagtctcgtgctccactctgacgctcggaacaactacagccactgtgcgg
caggttcctgctacagtggtcactactcaaccggggaagttacctgcacggataactgtg
cccctctctctcctgacccaaccactgaagagcaagagtgttgtgaccacaccgatggta
aaaggaagtctcaacacaaatatcagcagtctgggcaggaacatcatcctgaccaccatg
cccgctggcacaaagctgatcgcagggaacaaaccagtcagctttgtcacagcacagcag
ttccagcagcttcagcagcaaggacaggccacgcaggttcgcatccagacggtccaggca
cagcagctccagcagcacatggcatcaggctcccagaaatctgtttccacagtcgtagtc
acaacagcaccttcacccaaatgtgcccccgatcccccaactgcacctcaacagtga
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