KEGG   Cyclopterus lumpus (lumpfish): 117742396
Entry
117742396         CDS       T09199                                 
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117742396 (exosc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117742396 (exosc8)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     117742396 (exosc8)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C NYN_YacP
Other DBs
NCBI-GeneID: 117742396
NCBI-ProteinID: XP_034405585
Ensembl: ENSCLMG00005016445
LinkDB
Position
14
AA seq 277 aa
MAAGFKVAEPLEYHRSFLKENCRPDGRELSEFRTTTLNIGSISTADGSALVKVGNTTVIC
GIKAELTNPTVEAPGKGYIVPNVDLPPLCSSQFRPGAPGEQAQAASQFIADVIESSEVIQ
TEDLCIERGKLCWVLYCDMMCLDYDGNLLDACIIALLAALKNTQLPEVTISTETSSPEVN
LEKRRRLHIHKHPVAASFCVFDDSILIVDPTAEEESLSTAHITVVTDDEERLCIVHKPGG
TPLSGEKLQECINRATARQREIQKLVDKVVHSVKTAQ
NT seq 834 nt   +upstreamnt  +downstreamnt
atggcggctggtttcaaagttgctgagcctctggagtaccacaggagctttctgaaagaa
aactgtcgtcctgatggacgggagctgtcagagttcagaaccacaacactgaacataggg
tccatatccacagcagatggctcagccctggtgaaggttggaaacaccacagtcatctgt
ggcatcaaagcggagctgacaaacccaacagtggaggcaccaggtaaaggttacatcgta
cccaacgtggacctgccgccgctgtgttcctcacagtttcggcccggtgcaccaggagag
caggcgcaggcggccagccagttcatcgctgatgtaatagaaagctctgaggtgatacaa
acagaggacttgtgcattgaacgaggaaagctctgctgggtgctctactgtgacatgatg
tgtctcgactacgacgggaacctgttggatgcttgtatcatcgccctgctggctgccctg
aagaacacacaactcccagaggtcaccatcagcacagagacgagttcaccagaggtgaat
ttagaaaagagacgcaggctgcatattcacaaacatccagtcgccgcctctttttgtgtc
tttgacgactccatactgattgtagaccccacagctgaggaggagagtctgtctaccgct
cacatcactgtggtgacagatgatgaagagcgactctgcattgtccataaaccaggtggg
acgccactgtcgggagagaagcttcaggagtgcatcaacagagcgacagcgagacagaga
gagatccagaaactcgttgacaaagtcgtacacagtgtgaagacggcacaataa

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