Cyclopterus lumpus (lumpfish): 117742470
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Entry
117742470 CDS
T09199
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117742470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117742470
03041 Spliceosome [BR:
clum03041
]
117742470
03036 Chromosome and associated proteins [BR:
clum03036
]
117742470
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117742470
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117742470
mRNA cycle factors
Common to processing body (P body) and stress granule
117742470
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117742470
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117742470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
117742470
NCBI-ProteinID:
XP_034405761
Ensembl:
ENSCLMG00005012182
LinkDB
All DBs
Position
2:complement(10839821..10855109)
Genome browser
AA seq
756 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSAADGQGGGANPGNAFAAARQGGYTIAPAANYGWDGGRN
NFVNGYHDNRMAGGNTFNRGPPRMERGRGGVGGGYRGNRGGVFNPINPAQPMVFGGYENK
DAGGWNTAKETYGSFPNNRGKSAFFNDRGNANRGRFEHGGFGGGGGGGGGGGGGGGGGGG
GGNSRWVEESREEGDWSKPTPRNERLENELFAGSNTGINFEKYDDIPVEATGQNCPHHID
SFQDVDMGEIVMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILS
QIYNDGPGEALNAAKASGQDNGKYGRRKHFPISLVLAPTRELALQIYDEARKFSYRSRVR
PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMG
FEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENIT
QKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADALED
FLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLP
SDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQ
HKSSNRGRSKRFSGGFGARDYRQTAAGGTAGGFGGRGGRNQAAHGGTRGFGGGGFGNFYT
TDAYGGNYAHSQVDWRQCVTAHVSELLANQKWGKMT
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagctcgctgtcctagac
ttgagtgcggcagatggacaaggtggaggcgctaacccaggaaatgccttcgctgccgct
cgacagggtggctataccatagcgcccgcagccaactatggttgggacggggggcgcaac
aactttgttaatggctaccatgacaaccgcatggctggcggcaacacgtttaaccgtggc
ccgcctcgcatggagcggggcagaggtggcgtcggagggggttaccgaggcaacaggggc
ggtgtcttcaaccccatcaacccagcacagccaatggtttttggtggctacgaaaataaa
gatgccggcggctggaacacagcgaaagaaacctacggcagttttccgaacaaccgtggc
aagtctgcattcttcaacgacagaggcaatgctaacagagggaggtttgagcatggtgga
ttcggtggtggtggaggaggaggaggtggcggtggtggaggtggaggaggaggaggtggc
ggcggaaacagccgctgggtggaagagtccagagaggagggagactggtctaaaccaaca
ccacgtaacgaacgccttgaaaatgaattgttcgccggcagcaacactgggattaacttt
gagaaatacgatgacattcccgttgaggccacaggacagaactgccctcaccacatcgac
agtttccaagatgtggacatgggagagattgtcatgggtaacattgccctgagtcgctac
accagaccgacccctgtccagaaatatgccattcctattgtcaagtccaagcgagacctc
atggcatgcgcacagacgggttctgggaagactgcagcgttcctgctgccgattctcagc
cagatttacaatgatggaccaggagaagctctcaacgcggccaaagcatctggacaggac
aatggaaagtatgggcgccgtaagcacttccccatctcactggtgttggctccaaccaga
gaactggcactgcagatatacgatgaggccaggaagttttcctaccgctccagagtgcgt
ccctgtgtggtgtacggaggagccgacatcggccagcagataagagatctggagagaggg
tgccacctgctggtcgccacacctggaagactggtggacatgatggagaggggaaagatt
ggactggacttctgcaactacctggtcctggacgaggccgatcgcatgttggacatggga
ttcgaaccacagataagacgcatcgttgaacaggacaccatgccgcacaagggcatccga
caaaccatgatgttcagcgcaacctttcctaaagagatccagatcctagccagggatttc
ctggaggagtacatcttcctggcggtgggcagagtgggttccacctcagagaacatcact
cagaaagtggtgtgggtggaggagagcgacaagaggtccttcctgttggacctgctcagt
gccacagtcatccccagcgaggtacaggacaatactggagacaacatagagaaacctggt
aaggactcgttgactctggtattcgtggagaccaagaagggcgccgacgccttggaggac
ttcctgtatcgggagggctacgcctgcaccagtatccacggcgaccgctcccagagggac
cgagaggaggccctgagccagttcagatcagggaaatgccccattctggtggccacggcg
gtagcggctcgcggtctggacatctccaatgtgaagcatgtgattaacttcgacctgccc
agcgacatagaggagtatgtccaccgtatcggacgtacaggacgagtcggaaacctggga
ctggccacatcgttcttcaacgataaaaatgggaacatcactaaagacctgctggacatc
ctggtagaggccaaacaggaagttccctcatggcttgagagcctggcctatgaacaccag
cataagagcagcaaccgaggacgctccaagaggttctccggtggttttggagcgcgtgat
tatcgtcagacggccgccggcggcaccgccggagggtttggaggacgcggaggtcgcaac
caggcagcacatggagggacccgcgggttcggaggaggtggtttcggtaacttctacacc
accgacgcctacggaggaaactacgcacactctcaagttgactggcgtcagtgtgttact
gctcatgtgtcggagcttctggccaatcagaaatggggaaagatgacctga
DBGET
integrated database retrieval system
