Cyclopterus lumpus (lumpfish): 117742637
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Entry
117742637 CDS
T09199
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117742637 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117742637 (ddx46)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117742637 (ddx46)
Spliceosome [BR:
clum03041
]
Complex A
U2 snRNP components
U2 related factors
117742637 (ddx46)
Complex B
117742637 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117742637
NCBI-ProteinID:
XP_034406078
Ensembl:
ENSCLMG00005018685
LinkDB
All DBs
Position
14:complement(3021470..3031569)
Genome browser
AA seq
1083 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRSRDRKRV
RRSRSRERRRSRSRDRRRSGSRTRARRSRSGSPSKSRRPDEKSRSKEKDSVDPISEKKKI
KEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKRELEEMKQGKK
WSLEDDEDDDEDNSAPMEGDDDEDGEEKGESEEKEVKEEKKEEEEEEEKKENKEKEEKKE
KEEKEKEKESETPMEQQPEEDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVM
TVVKTKKGPNTHKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHKKI
EYETYRRNFYVEVPELARMTPEDVNSYRLELEGIAVKGKGCPKPIKTWVQCGVSMKILSA
MKRHGYDKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGP
ISVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRM
IDMLGANSGRVTNLRRATYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA
MEALARRILAKPLEVQVGGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFV
DKQEHADNLLKDLMKASYPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDVK
QLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITDDQVRYAGDIIKALELSSSPVP
PELEQLWVTFKDQQKLEGKTIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDD
EDGALDIEEQIESMFNSKKRVKDLSAPGSAGGGSGQTASSSTVPGGMPGIGPPSAGNIQK
LEMAKRLALKINAQKNLGAEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKL
NYTPVEKLEEERQAAEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITI
RGTYFPPGKEPKEGERKIYLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRY
KVL
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgagtcgagacactacaggaagcggtcggcttctcggggccgctcgggcagt
cgctcgaagagtcgctccccggacaaacgctccaagaaggacgatcgagaccggaaccgg
agggagcgctcgcgcagccgggaccgccgcaggtcccggtccagagacagaaaacgggtc
aggcgctccaggagcagagagaggaggaggtccaggagccgagacaggaggaggtcaggc
agcaggacccgagctcggaggtcccggtctggaagccccagcaagagcaggaggcccgat
gaaaagtcgaggagcaaggagaaagacagcgttgatcctatatccgaaaagaaaaagatc
aaagaggagaaagaggatgagaaggtcgaggatcaagactttgaccagaacaagctggag
gaggagatgaggaagaggaaggagcgtgtggagaagtggagggaggagcagaggaagaag
gccatcgaaaacatcggagagatcaagagggagctggaggagatgaagcagggcaagaag
tggagcctggaggatgacgaggacgatgacgaggacaattccgcgccgatggagggagac
gacgacgaagacggggaagagaagggggagagcgaagagaaggaggtaaaggaggagaag
aaagaagaagaggaggaggaggagaagaaagagaataaagagaaggaggagaagaaggag
aaagaggagaaggagaaagagaaggagagcgagaccccgatggagcagcagcccgaggag
gacgacgtggaccctctggacgcctacatggaggaggtgaaacaggaggtgaagaagttc
aacatgggagccatgaaaggaaacgataagaaaggagcgatgacggtaaccaaagtgatg
acggtcgtcaaaaccaagaaaggaccaaacactcacaagaagaagggtgagctgatggag
aacgaccaggacgccatggagtactcgtctgaggaggaggaggtggatctgcagacggcg
ctgacgggctttcagaccaaacagaggaaggtcctggagcccgtggaccacaaaaagatc
gagtacgagacgtaccgcaggaacttctacgtggaggtccccgagctcgccaggatgacc
ccggaagacgtgaactcgtacaggctggaactggaaggcatcgccgtcaaggggaagggc
tgccccaaacccatcaagacctgggtccagtgtggcgtgtccatgaagatcctcagcgcg
atgaagaggcacggctacgacaagcccacccccatccaggcccaggccatcccggccatc
atgtcgggccgagacctcatcggcatcgccaagaccggcagcgggaaaaccatcgccttc
ctgctgcccatgttccgacacatcatggaccagaggcccctggaggagtccgagggaccg
atctctgtcatcatgactccgaccagagagctggctctgcagatcaccaaggagtgcaag
aagttctccaaagcgctgggactccgcgtggtgtgtgtttatggaggcacgggcatcagc
gaacagattgccgagctgaagagaggagccgagatcatcgtgtgcacaccgggaagaatg
attgacatgttgggggccaacagcggtcgcgtcaccaacctgcgcagagccacgtacgtg
gtgctggatgaagccgaccggatgttcgacatgggcttcgagcctcaggtgatgcgcatc
gtggacaacgtgcgcccggaccgccagacggtcatgttctcggccaccttccccagagcc
atggaggcgctggctcgccggatcctggccaagcccctcgaggtgcaggtggggggccgc
agcgtcgtctgctccgacgtggaacagcacgtgctggtgatcgaagaggacaagaagttc
ctgaagctgctggagattctgggccactaccaggaaaagggctcggtcatcatcttcgtg
gacaagcaggagcatgcggacaacctgctgaaagacctgatgaaggcctcgtacccctgc
atgtcgctgcacggaggaatcgaccagtacgaccgagacagcgtcatcaacgacttcaag
aacggcgcgtgccgcctgatggtggccacgtccgtggccgcccgagggctggacgtcaag
cagctgatcctggtggtcaactacaactgccccaaccactacgaggactacgtgcaccgg
gccggacgcacgggccgagcgggcaacaagggcttcgcctacaccttcatcacggatgac
caggttcgctacgccggggatatcatcaaagctttggagctgtccagctctccggtgccg
cccgagctggagcagctctgggtcaccttcaaggaccagcagaaactggagggcaagacc
attaaaagcagcagcgggttctcaggaaaagggttcaagttcgacgagaccgaacacgcg
ttggccaacgagaggaagaagctgcagaaagctgctctcggtctgcaggactcggacgac
gaggacggagccctggatatcgaggagcagatcgagagcatgttcaactccaagaagcgg
gtgaaggatctctctgctcccgggtcggccggcggcggctcggggcagacggcgtcctcg
tccaccgtccccggagggatgccgggcatcgggcccccgtccgccgggaacatccagaag
ctggagatggccaagaggctggcgctcaagatcaacgctcagaagaacctcggcgccgag
gctcaggacgtgatgcagcaggccaccaacgccatactgcggggcggcaccatcatgacg
ccctcggtgtcggcgaagaccatcgcggagcagctggcggagaagatcaacgccaagctg
aactacacccccgtggagaagctggaggaggagcggcaggcggccgaacaggccgagacc
gtcaagagatacgaggaggagctggagatcaacgacttcccgcagacggccaggtggaag
gtgacgtctaaagaagctctgcagaggatcggcgaatactccgaggccgccatcaccatc
aggggaacctacttccctccgggcaaagagcccaaggagggagagcgcaagatctacctg
gctatcgaaagtgcaaatgaactggccgtgcagaaagccaaaacggagattacgcggtta
atcaaggaggagctcatcagattacaaaattcctaccagccgacaagcaaaggccggtac
aaagtgctgtag
DBGET
integrated database retrieval system
