Cyclopterus lumpus (lumpfish): 117742648 Help Entry 117742648         CDS       T09199                                  Symbol pdcd11 Name (RefSeq) protein RRP5 homolog isoform X1   KO K14792   rRNA biogenesis protein RRP5 Organism clum  Cyclopterus lumpus (lumpfish) Brite KEGG Orthology (KO) [BR:clum00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:clum03009]     117742648 (pdcd11) Ribosome biogenesis [BR:clum03009]  Eukaryotic type   90S particles    Other 90S particles     117742648 (pdcd11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  S1_RRP5 S1 Spt6_S1 HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N Suf TPR_14 OB_RRP5_4th HAT_Syf1_CNRKL1_C TPR_19 OB_RRP5 UTP6_C TPR_CcmH_CycH TPR_16 ARM_TT21_5th S1_2 DUF2110 NRDE-2 Motif Other DBs NCBI-GeneID:  117742648 NCBI-ProteinID:  XP_034406138 Ensembl:  ENSCLMG00005000779 LinkDB All DBs Position 1:11076635..11090399 Genome browser AA seq 1804 aa AA seqDB search MASVEEDFPRGGTAKKPTESKIVVQRTEVDNLFQSNEPATTKKRKGAGKDADKKLKKPKT GKGDGLTLNAAAKCVEILHIKNLKEGILMLGCVKEVTDFEVTVGLPCGMQGYLSIMNICD SYTKLLSEQLDSADTEDICSLQHLFSPGMVLRCVVAKLDVAKRGSISIQLSINPKLVNKA ITSISMKAGMVLSGCVESVEDHGYIVDIGLSGTKAFLPKKAVKDQHKNPEELKVGQYLTS QVEEVKNDGRLARLSVSPPTAAQACAEAEQGWNLTNLMPGLLVKATIKKVTKHGLILDFL SSFSGQVDVLHMEPDQTSNYTEGSEVRACVLYVEPSARLVGLSLRSYLVQRGTSIDQAPA GGDRIGEVVKGCKIIAMHHMSGAMVEMPDTTMAFVHRNHLKESNTPANENRMLAMTEHTI RILDFSAMEQIYFVSLRKSVIARRFFRYHDLEAGQVVEGTVSVLFDHGMIVHLSDHIKGM VPRTHLSDILLKNPEKKYVEGMKIKCRVLSVDAQNKKLYLTRKKALVESSLPLFLSFTDA RPGRVSHGYIVCIKEFGCIVRFYNSVKGLVPLNQLSSEPIISPEEVFYVGQVLKAKVLKC EPDKAKMLLSFKAAVEGDTDEAAMPQLNCEVGTRLEAKVLKKSVSGLEVAILPDEIHAVL PTMHLSDHISNCSLLWESLQEGDNISNLICFGKNKKNITITKKPTVRWSLEEGVVAKDFS EVTVGMQLIGWIKNIMSYGVFVEFPYGLVGLAPTSVMTDKFLHDATTAFQLGQTVFAKVS NLDVEKRRFLVTLKISEVISPEGDAQTRLINGLKERKAVTEMLAMRENSDPRQQLAALSV GQKLKLTVDTAKDSSATFKSDDLAGATIMATKHHVKGVNLSSGQKVTAVVLHVDILSTCV YVSIRPNLLAKKKSLAEGSKCTAIVQCIDKDFAIISLGDTAQLTVIQTSNHLNETFQSES DKLMAGMSLAVEVIEPSCQELQGLALVSWKRTSRATSENQKGHRFGDIVRGIVRSVKPAC IQVTLEDGSTGSVHVSEVVELAEVCRGSFPTSKVKVGSAVTARVIGGREASSHRFLPFSH PRFTYTIPELTLVPSKLDQSTDLVPAVPAKERLDAYTVGEEITCFVSKFNPEKKTLKVTI DPCITGTVDLLATITDPRNASHPERLFKLGQAVLAKVIEVNSKPQRFMLSLTGVHKLEKD SVALGMVTKIIPQVGLLVKLPFGNMGTVAVTELADAYKPNPLAAYSKDQLLRCFLLGDTN GKWQLSLRPSRLNPQQTKPVKDPEVLSVDNLKAGQIIRGYIKSVGEHGVFIRLSWNITGR AQLQHCTKYFVNSYTVLSKHLTPNTLLTTKIHSIDKKEELVHLSLLPGDTGKADVLPESL GLPLRLIGEEKKEYDSKKKKKRTASESEQSQVSNKKKKTKKSEADDNDSGVEVYFREEED KKEEEAPKSGSVKQVTPSSGPSRLQVAAGFSWDVHLSSLKPASAAQEGDSSDGEDQDGSS KPQKRSRHELQQEQKAAEKALVQRETELMDPSLRPQDAGAFERLLLASPNSSLLWLQYMA HHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERALQF CEPMLVYQQLADIYAKSDKAKAAEGLYKTMVKRFRQNKAVWLSYGTFLLQQGQSDSASVL LQRALKSLPSKESVDVIAKFAQLEFRYGDSEKGRTMFDKVLTSYPKRTDLWSVFIDIMVK RGSQKEVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPESIQAVKEKAMEFVEAKGT EAAN NT seq 5415 nt NT seq  +upstreamnt  +downstreamnt atggcatcggtggaagaagacttccctcgaggagggacggcaaagaagcccactgagagt aaaatagtggtgcagcggacagaagtggacaacttattccagtcaaacgaaccagccaca actaagaaaagaaaaggggcaggcaaagatgccgacaagaagctcaagaagccaaagacg ggcaaaggagatggtctgacactgaatgcagcagccaagtgtgtggaaattctacacatc aagaatttgaaggagggtatcctgatgctgggctgtgtgaaggaggtaactgactttgag gtgacagtcggcctgccctgtggcatgcaaggctacctcagcatcatgaacatatgtgac tcctacaccaagctgcttagcgagcaactggattcagctgatacagaggacatctgctct ctacaacatctcttctcccctggcatggtgttacggtgtgtggttgccaagttggatgtc gccaaaagaggctccattagcatccagctgtcaatcaatccaaagctggtcaacaaggct atcacctctatctctatgaaagctggcatggtcttgagtgggtgtgtggagagtgtggag gatcatggctacatagttgacattggcctcagtggaaccaaagccttcctgcctaagaaa gcagtgaaagaccaacacaaaaacccagaagagctgaaagtgggtcagtatttgacttct caagtggaagaagtaaagaacgatgggcgtctggcccgcctttctgtcagcccgccgacc gccgcccaggcctgtgctgaagccgagcagggctggaacctcaccaacctaatgcctggc cttctcgtcaaagctacgatcaaaaaggtgaccaaacatggtctgatcctggacttcctg tcctcctttagtggccaggtggacgttctccacatggagccagatcagacatccaactac accgagggatctgaggtgcgagcctgtgtgctgtatgtggagccgtccgcccgtctggtg ggcctgagcctgcgcagctacctcgttcagcgtgggacaagtattgaccaagctcctgct ggaggtgaccgcattggggaggtggtgaagggctgcaagataatcgctatgcaccacatg tctggagccatggtggaaatgccagacacaacaatggcctttgtacataggaaccacctg aaggagtctaatacgccagctaatgaaaacagaatgctggctatgactgagcacaccatc aggatactggacttcagcgccatggagcaaatttattttgttagtctgcggaagagtgtg attgccaggcgtttttttagatatcacgatcttgaggccggtcaggttgtagaggggaca gtgtcagtcctgtttgatcacggcatgatcgtgcatctgtctgaccacatcaaaggcatg gtgccccggacacacctgtctgacatcctcctcaagaacccagagaagaagtacgtcgag ggcatgaagatcaaatgtcgggtgctgtcagtagatgcacagaataagaagctgtacctg accagaaagaaggctctggttgaaagctccctgccattgttccttagctttaccgatgcc cgtcctggtcgtgtgtcccacggctacattgtctgcatcaaagagtttggctgcattgtt cgtttctacaacagtgtcaaaggtttggtgccgctcaaccagctcagctctgagccaatc atcagtcccgaggaggtcttctacgtggggcaggtgttaaaggctaaagttcttaagtgt gagcccgataaggcaaagatgttgctgtcatttaaggccgcggtggagggagacacagac gaagctgccatgccccagttgaactgtgaggtgggaacgaggctggaggctaaagtgctg aaaaagtcagtcagtggtctggaggtggccatcctccctgatgagatccatgccgtacta cccacaatgcacctttctgatcacatatctaactgctctctgctgtgggagagtttgcag gagggagacaacatctcaaacctcatctgcttcggcaagaacaaaaagaatattaccatc accaagaaaccaacggtgagatggtcgctggaggaaggagtggttgccaaagacttctct gaagtcacagttggaatgcagctgattggctggatcaagaacatcatgtcttatggcgtt tttgtagaatttccatacggccttgttggtcttgcacccacgtctgtcatgacagacaag ttcctccacgatgcaacgactgccttccagctgggccagacagtgtttgctaaagtgagc aacctggatgtagaaaaacggcgtttcctggtcacgctgaagatttcagaggtcatatct ccagagggtgatgcccagacgagactcattaatggcctgaaggaaagaaaagctgtgact gaaatgttagctatgagagagaacagtgatcctcgccagcagctggctgctctgtctgtt ggtcagaagctgaagttgactgtagatactgcgaaggacagcagtgccaccttcaagtct gatgatttggctggtgctaccataatggccaccaagcaccatgtcaagggtgttaatttg tcttcgggtcagaaagttactgcggtcgtcctccatgttgacatcctgtcaacctgcgtc tatgtgtccatccgacccaatctgttggccaagaagaaatctttggctgaaggatcaaag tgcacagcaatcgtgcagtgcatcgacaaagactttgccatcatctcactgggtgacacg gcacagctgactgtgatccaaacgagcaaccacctgaatgagacatttcagtccgagtca gacaagctgatggcggggatgagtttggccgtcgaggtcatagaaccaagctgccaggaa ctgcaggggctcgccctcgtgtcgtggaagcgcacttcacgcgcaacctcagaaaatcag aagggtcaccgctttggggacattgtgcggggtatagtgcgctcagtgaagcccgcctgc attcaggtcactctcgaggatggaagtacggggagcgtgcatgtttctgaggtggtggag cttgcagaagtgtgtcgggggtccttccccacatccaaggttaaagtgggcagtgcggtc accgccagggtcatcggagggcgcgaagcctccagccacagattcttgcccttctcccat cccagatttacatacaccatccctgagctcacacttgtacccagcaaattggatcagagt acagatttagttccagcagttccagcaaaagagagactagacgcctatacggtgggggag gaaattacatgctttgtatcaaagtttaatccagagaagaagactttgaaggtcaccata gatccttgtattactgggacagttgacctgctggccacgatcaccgatccaagaaatgca agccaccccgagaggctgtttaagctcggccaagcagtccttgccaaagtgatagaagtg aactccaaacctcaacgtttcatgctgtcactcacaggtgttcataagctggagaaagac agcgtggctttggggatggtgactaaaattatcccacaagttggccttctggtcaaactt ccctttggcaacatgggaacagttgctgtcactgagctggctgatgcctacaagccaaac ccattggctgcgtacagcaaggatcaactgttgaggtgtttcctccttggggatacaaat ggcaagtggcagttgtctctacgtccatcaaggctgaacccacagcagaccaagccagtg aaggacccagaagttttgtctgtagacaacctgaaggcaggccagatcatcagaggctac atcaagtctgtgggagagcatggggtcttcatcaggttgtcatggaacatcacgggaaga gcccaacttcagcactgcaccaagtactttgtcaacagctacacggtcctctccaagcac ctgactcccaacaccctgctcacgaccaagatccacagtattgacaaaaaggaggagttg gtccacctctctctgctccccggggacactgggaaggcagacgtcctcccagagtctctc ggtctgccgctgcgtttgatcggagaggagaagaaggaatatgactcgaagaagaagaag aaacgcacagcgtctgagagtgagcagtcccaggtctcaaacaagaagaagaaaacaaag aaatcagaggccgatgacaatgacagcggagtggaagtgtacttcagagaagaggaggat aagaaagaggaagaagcacccaaatctggttctgtaaaacaggtgactcccagctcgggt ccatccagactgcaggtggcagcaggtttctcctgggacgtgcatctgagctccctgaag cctgcctctgcagcgcaggagggcgactccagtgatggagaggaccaagatggaagcagc aagccccagaaaaggtctcgtcatgagcttcagcaagagcaaaaggcagcagagaaggcc ctggtacagcgggagactgagctgatggatccgagcctgcggcctcaagatgccggcgcc ttcgagcgcctgctcctcgcttcacccaacagctcactgctctggctgcagtatatggct caccatctacaggccacccaaatcgagcaggcccgtgctgtggcagagagggccctaaaa actatctcctttagggaggagcaggagaagctgaatgtgtgggtggccctgcttaacctg gagaacatgtacggcacagaggagagcctgaaaaaagtgtttgagcgagcgctgcagttc tgtgagcccatgcttgtgtaccagcagctggctgacatctacgcaaagtccgacaaggct aaggcggcagagggcctgtataagaccatggtgaagcgtttccgtcagaataaggccgtg tggctgagctacgggaccttcctgctccagcagggccagagtgacagtgccagtgttctc ctgcagagggcgctgaagagtctgccctccaaagaaagtgtggatgtgatcgccaagttc gcgcagctggagttccgttatggtgattcagagaaaggtcgcaccatgtttgacaaagtc ctgacgagctacccgaaacgcacagacctctggtccgtcttcatcgacatcatggtcaaa cgtgggtcacagaaggaagtcagggcgctgtttgatcgggtgatccacctgagcgtttca gtgaaaaagatcaagttcttcttcaagcgctatttagagtacgagaagaagcacggcacg ccggagagcatccaggcagtcaaagagaaggccatggagtttgtggaagctaaaggcaca gaggccgccaactaa

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