KEGG   Cyclopterus lumpus (lumpfish): 117742962
Entry
117742962         CDS       T09199                                 
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
  KO
K16498  protocadherin delta 1
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03273  Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03273 Virion - Lassa virus and SFTS virus
    117742962 (pcdh1a)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:clum01009]
    117742962 (pcdh1a)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:clum04515]
    117742962 (pcdh1a)
Protein phosphatases and associated proteins [BR:clum01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117742962 (pcdh1a)
Cell adhesion molecules [BR:clum04515]
 Cadherins
  Protocadherins
   117742962 (pcdh1a)
SSDB
Motif
Pfam: Cadherin Protocadherin Cadherin_2 Cadherin_CELSR2_9th He_PIG RET_CLD1
Other DBs
NCBI-GeneID: 117742962
NCBI-ProteinID: XP_034406547
Ensembl: ENSCLMG00005020539
LinkDB
Position
14:16247541..16317962
AA seq 1190 aa
MELNLKVVLFWVLVLHCGSAEGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRSLAKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTNMGALFSIPLATDRDSERNGVADYALTAGPDAATL
FGLQVAEDRGGKLPQLIVLGNLDREVKDSYDLTIKAVDGGNPQRYSSALLRVVVTDANDN
PPKFERATYEAEVLENSPVGHSVLQVKANDSDMGPNGEIEYTLHQAVDPVPKLLRIDRST
GIIYVKGSLDREEISSLSFYVVARDKGPQPKSSKTFVTIEVIDQNDNAPAVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSSDNKRKY
FLQTTTPLDYERIRDYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPIFSPTMFEVDFS
EENQPGERVLDVIASDADSGTNAELLYNIVADSSIKGLFEIDPNTGEVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVINVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDSDKGDNAHIHLSVEPDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGITINVLDENDNDPVVTKPSNSSFRRLSPLASPDSHVEIVEAEDLDSGPNAELVFSM
AGGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPARHATALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGLAAQRSNILFGSLAGLAGVVMLILVVVFVRH
RIQRETKSGYQAGKKETKDLYAPKQVPKNAKGKRGRKGKPQKSPKPLGEDEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQLKYSNKQHPHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTTECSELGHSDACWMPGHPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSTRPGGEEHR
SRLPPSRSAYSNSGHDASQDCPLEEMPLSVASEFPPTSPTAHTPKREIYL
NT seq 3573 nt   +upstreamnt  +downstreamnt
atggaactaaacttaaaagtagtgctgttctgggtcctggtgctgcactgtggctctgct
gaaggcagtatcctgtaccgggtccaggaggagcagcctcccaacactctaattggtagc
ctggcagcagaccagggcctgccagactctggtcacctctacaagctggaggtgggtgcc
ccttaccttcgtgtcgatggcaagacgggagacattttcaccacagagattcccatagac
agagagaccctgagggactgtcgatcccttgctaagggtaagccctgctacctggaattt
gaagtatcggtgacggatctgatacagaaccagagcccacgactcattgaaggacgcatt
gaggtacaggacatcaatgacaacaccccgcaatttccctcttccgtgctcaccatctct
gtccctgagaatacgaacatgggggcgctcttctccatccctctcgctacagacagggac
tctgaaaggaatggagtggctgattatgctctgactgccgggccagacgcagcaactcta
tttggtttgcaggtggctgaagacagggggggtaagctcccacagctcattgtcctgggc
aacctagatcgtgaggtaaaggattcctatgacctcaccatcaaagcagtggatggagga
aacccacagcgctacagcagtgctctgctgagagtggtagtcaccgatgccaatgacaac
cctccaaagtttgaaagggccacctatgaggcagaagtgttggaaaacagtccagtgggg
cactctgtattacaggtcaaagcaaatgactctgacatgggccctaacggagaaattgag
tacaccctccaccaagcagtagacccagtgccgaaactcttacgcattgatcgctccact
ggcattatctatgtcaaaggatccctggacagggaggaaatcagcagcttgtccttctat
gtggtggcgagggataagggtcctcaacctaaaagctccaagacatttgtaactatagag
gtgattgaccaaaatgacaatgctccagcggtggagattcgcggcattggtctggtgaca
cacagtgaaggagtggctaacatttcagaggacatgccagttggaacagctgttgctttg
gtgcaagtgtctgacaaggatgagggagagaatgctgtggtcacgtgtgtggtcgcagga
gatgtgcccttccagctccgccctgccagcgactcatccagtgacaacaagaggaagtat
tttctacagaccaccactcccctcgactacgaaaggattagggattaccgagtggagatt
gtggctgtggattctggaaatccggcactgtctagtacaaattctctcaaggtgcaggtg
actgatgttaacgacaactctccaatattctccccaaccatgtttgaggtagatttttcc
gaagaaaatcaaccaggggagagggttttggatgttatagcttcagatgctgacagtggc
accaacgcggaactcctctataatattgtggcagactcatccatcaaaggtctgtttgag
attgacccaaatacgggcgaagtaagagcccgaagcccgcttgaccgtgagcataaagaa
cgctatgagttccgggtcaccgcagcagataaagggtcacctgttcacaaaggaacagca
actgttgtaataaatgttcttgaccgcaatgacaatgaccccaagttcatgcttagtggc
tacagcttttcagttttggaaaacatgcctcccctcagtccagttggcatggtgacggtc
ctggattcggacaaaggggataatgctcatattcacctctctgtagagcctgatggaggg
aagtttgttgttcaaaatggaacaggcaccattctttcaagcatctcatttgacagggag
aaagaaagcagctatacgttccgtctaaaagcagtggatggaggagagccacctcgatct
tcatatgtgggcattaccatcaatgtactggatgaaaacgacaacgaccctgtagtcacc
aagccctccaattcttctttcaggcgcttgtcccctctagcctccccggatagccatgtt
gagatagtggaagctgaagacctggatagtgggcctaatgcagagctggtcttcagcatg
gctggtggaaacccttaccagttatttcgcatttccccctccagtggggagatcactctc
gcaaaagagatgactcgaaaacatggcggactacatcgtcttgtggtgcgtgtgagtgac
agggggaagcctgcacgtcatgcaactgccctggtacacatctatgtcaatgaaaccatt
tccaatgtcagcttggtggaggccctagtaggacacagtctttacactccactggacagg
gacattgctggtgatcctgacaatggtttggctgcacagcgtagtaacattttgtttgga
agccttgctggtttggcaggtgttgtcatgctgatcttggtggtggtatttgttcgacac
cgcatccagagagaaactaagagtgggtatcaggctggcaagaaggaaacaaaggacttg
tatgcacccaaacaggtgccaaagaatgccaaaggcaaacgaggaaggaaaggaaaaccc
caaaagtccccaaaaccactcggggaagatgaggaagtcagccttcaaaagagtctaaag
ttcaaccttgatggagtcaatgatagccccaggatacacttgcccttaacatattcacca
ggaagcccagatataggcaggcactaccgctccaactcccccttaccctccatccagctg
caggcccaatccccttcagcctcacagaagcatcaagctgtccaggaccttcctgctgcc
aacacctttgtaggaacggggggagatgacaactccaccggctcagaccagtattcagat
tacagctacaagaccagccaactgaagtacagcaacaaacagcacccccatcggcgagtg
accttctccaccgccaaccctgtgcaggacctgcaggacgcctctcagcacagctactat
gacagcggcttggaggaatcggagactcccagcagtaagtcatcttctggtcctcgcatt
ggacccctgaccctgcctgaggaccactacgagaggaccactccagatggcagcatcgga
gagaccgagcaccctgaaaacgatatccgctccctccctgatgtggcgatgaccggaaac
tgtacaaccgagtgcagcgaattgggccactcggacgcctgctggatgcccgggcatccc
tcccccgtacgcaagaccaggaaccccccgaaactctccaccttcgtgccttaccaggag
agagggagcctgggtcgcctggctaacgggagcaccaggccaggtggcgaggagcaccgg
tcgcgccttccgccctcccgcagtgcctactccaacagcggtcacgacgccagtcaggac
tgccccctagaggagatgcccctgagcgtagcctcggagttcccgcccacctcccctacg
gcccacactccaaaaagagaaatctacctgtga

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