Cyclopterus lumpus (lumpfish): 117742987
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Entry
117742987 CDS
T09199
Symbol
nectin1a
Name
(RefSeq) nectin cell adhesion molecule 1a
KO
K06081
poliovirus receptor-related protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03266
Virion - Herpesvirus
clum04514
Cell adhesion molecule (CAM) interaction
clum04517
IgSF CAM signaling
clum04520
Adherens junction
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
117742987 (nectin1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117742987 (nectin1a)
04517 IgSF CAM signaling
117742987 (nectin1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117742987 (nectin1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117742987 (nectin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
clum04515
]
117742987 (nectin1a)
04090 CD molecules [BR:
clum04090
]
117742987 (nectin1a)
Cell adhesion molecules [BR:
clum04515
]
Immunoglobulin superfamily
Nectin family
117742987 (nectin1a)
CD molecules [BR:
clum04090
]
Proteins
117742987 (nectin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
V-set
Ig_2
Ig_3
I-set
ig
Ig_PVRIG
Motif
Other DBs
NCBI-GeneID:
117742987
NCBI-ProteinID:
XP_034406586
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All DBs
Position
14:complement(10640416..10653534)
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AA seq
501 aa
AA seq
DB search
MDSTGFWIFLITTCVIPGIKGQTVEMDDGKWGYAGSKVDLRCRFINSLPPVKISQVTWQK
LVNGTKQNVAIANPSLGVSVAPPYRDRVTFKNAAVRRRTPTLEDTTITFSLLRLSDESSY
ICEYTTFPAGNRENTVNLTVYVRPTTQISLSTPTLVARSSNLKTPVATCISANGKPPGTI
KWETRVPGEVTTREYRNSDGTFTVQSEYILVPSRETHKETLTCVTTYNDEVFTDSVTLDI
QYEPEVSVDGFDGNWYLNRENVQLSCQADANPAVSLYQWRLVNGSIPSNADIRDNILTLK
GPVTYDMQGTYVCDATNSIGTRSGSVEIGIIEKPLPQIATGDVISVIALLLAAGVLMGIT
VTVLVLKIRSRKGSASNASPSIKPCQPIRKRPADDIQHSGRFYEELPNTADYVSYRLACN
KEDYPDPYSPPIKPQLSFLPQQPYHSSQPTTATSSSGTNTPNHTLSPPSHTTAIFKYPSV
TGLSSPPPGVAAYTFPKEQYV
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggacagcactggattttggatattcctgataaccacttgtgttattccaggaataaag
ggccagactgttgaaatggatgatgggaagtgggggtatgctggctcaaaggtggatctc
cgctgtcgcttcatcaacagcctcccgcctgtcaaaatctctcaggtaacatggcagaag
ctggtgaacggcactaagcagaacgtggcaatcgccaatccctccctgggtgtgtccgtg
gccccgccatacagggaccgtgtcaccttcaagaatgcagcagtgaggcgacgaactccg
actctggaagacaccaccatcaccttctccttgctccgcctctcagacgagtccagctac
atctgtgaatacaccacgttccctgcagggaaccgagaaaacactgtaaacctcactgtc
tacgttcggccaacaactcagattagtctatccacaccgacgctggtggctcgttcatcc
aatctaaaaaccccggtggccacctgcatctctgccaacggaaagccacccggtaccatc
aaatgggagacgagggtgccaggagaagtgaccacccgagagtacaggaactcagacggg
acgttcactgtccagagtgaatatattttagtgcccagcagagaaacacacaaggagacg
ctcacctgtgtcaccacctacaacgacgaggtcttcactgacagtgtcaccctcgacatt
cagtatgagccggaggtttcggtggatgggtttgatggaaactggtacctgaaccgagag
aatgtccagctgagctgccaagctgatgccaacccagccgtctctctgtatcagtggaga
ctggtcaatggctccataccaagcaatgctgatatccgcgacaacatcctgacccttaaa
gggccggtcacgtatgacatgcagggcacctatgtgtgtgatgcaaccaacagcatcggg
acacgatcgggctctgtggagatcggcattatcgaaaagcctctaccgcagatcgcaact
ggtgatgtcatcagcgtaattgccttattactggctgctggagttctcatgggcattact
gtcaccgtcctggtgctcaaaataagaagtagaaaaggcagcgcctcaaatgcctctccg
tccataaagccgtgccagccgataaggaaaagaccagcagatgatatccagcactcaggg
cggttttatgaagagcttccaaacacagcagactatgtgagctacagactggcctgcaac
aaggaggactacccggatccctactcccctcccatcaagcctcagctctcatttctgccc
caacaaccctaccactcctcacaaccaaccactgcaaccagcagcagcggtaccaacacg
ccaaatcacaccttgtctcctccttcacacaccactgccatctttaaatacccctctgtc
acaggtttgtcttctcctcccccgggagtggcagcgtacacttttcccaaagagcagtac
gtctga
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