Cyclopterus lumpus (lumpfish): 117743022
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Entry
117743022 CDS
T09199
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117743022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117743022
03036 Chromosome and associated proteins [BR:
clum03036
]
117743022
Transcription factors [BR:
clum03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
117743022
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117743022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
117743022
NCBI-ProteinID:
XP_034406637
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All DBs
Position
14:complement(15562417..15583445)
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AA seq
1886 aa
AA seq
DB search
MSAATLSTSKLNVLVNKLHEYLAHSTVEDSNGTPTSEDADGLTNRSCSVGNLTGHAATVA
GVDTKYSRRKPSVVIKHSGLDESGDSNASEDVDLPVNTNGRLDITRLPKGTVLVRPEPVD
NGRDDFRGPEFRSRKSGVLRKDFSRRRGGVEHMGIVSCTACGRQVNHFQKDSFFRHPVLK
VLICKSCYKYYSSDDISKDGDGMDEQCRWCAEGGNLICCDFCSNAFCKKCILRNLGRKEL
SGILESKWYCYVCSPETLFDLVMACDNVLENMEHLWYQQRRKNRVEPEKSDLYAMLPHLP
QNIPLDKWDHTGMDGSVVFNYNTLQISKDVTKKAKHLVDSTNILNRTFVNFIHSVTANQQ
APPVRTLYLNSFLSVVKGLRKSLAALEDSLKEEFSDLDVMSCWEKFFSEDFNAQPGADAE
TDNPDKRCLSDLQKLAAEHLEDYDSDSKGFIAGRTAHACPGTNLDSDSHGVRPRAQKIVL
KPSTSGVNMTKKLVVKLTPVPMEQGPSSDAPEKDIHMSDKSEGKDVSDSEETGVVGAKAD
SKMSNDSSIASLHTEEEQGNRRSPRVKTTPLRRPSDVKAKTSSAADSDSDSDPEETCSSA
PAKNTEEQSENRARDDSDSDEVPAALLERAAITQSSDEPQSDENGGKASTKVAKKCLFWL
TKNSPISPEKMRRKRKMLDRSPESDSSNRSVKSRRGSGTDSSRDQNSQKIQHLNTLRPIG
KSHLVKREDEDVARNQGRIQPGKSKAKSHQKAMESSSSSNDDDDDDDDDDDDDGDDDSGS
EGSDQKMKPITEDVALLGAAAFHQSSGDEEHSGPSWAAEDDDDDDDDPENRIAKKMLLAQ
IKANYSSGDDISSDEETPEEEKVKQGNETDENGEELTSDSSDTTSNGPNSRHHLLRLKLT
LDEGTPSDEPESVVAKPASKKRASSKHLSSDSESEEDTNESDSQDIGMSEELSQSEDEAG
GNGLKSSRLSSKGKEAPPSYEQKKPVPCIWLSDSNSEKSDKEDDDEENSDSKGTPKGRKK
IRKIIDDENLRAETQEAVREEQERCKRLASREQQMEDRRESIVIEDELTQVVCPITTKLI
LDQDETTKKPLVQVHRNLVTRLKPHQVDGVQFIWDSCCESVKKANSSPGTGCILAHCMGL
GKTLQVVTFLHTVLLSENLKFRTALVVCPLNTILNWDSEFKKWQSNMQQDQVKVTELASV
KNVRERIRALQRWRRDGGVMIMGYEMYRNMSLAQMVKDQECKKDLKSLLVNPGPDFVVCD
EGHILRNERSNISKSMNAIRTQRRVVLTGTPLQNNLNEYHCMVNFIKRNLLGSLGEFRNR
FINPIQNGQCADSTSRDVRIMKKRAHVLHAMLVGCVQRRDYSELTQFLPPKHEYVLEVRV
TPHQYRLYRYYLDHVTGVSSLTNTAKGKIGANLFKDFQALSRIWTHPWCLQLNYISKENK
SYFKKNKTKAAAVQRNEAERALRENAGKEGNNNDGSAAVTVGVSTGAAAVDECWFKNLLS
EEDANIMEHSGKMVLLFKILRMAEDLDDKVLVFSQSLISLDLIEDFLKASHHARDPSLLK
EGSWIKNVDYYRLDGSTNAMLRKKWADQFNNVSNVRGRLFLISTRAGSLGINLVAANRVI
IFDASWNPSNDIQSIYRVYRFGQLKHVFVYRFLAQGTMEEKIYDRQVTKQSLANRVVDQQ
QIERHYTLFELTELYTFEPDMLDDPNSKKSKRSTSVLPKDNILARLLQTSKDQIVAFHEH
ESLLDHKQEEELSEAERKDAWAEYEAESSNLPTSLNQKTLDTKTNEELVELLNKSRADVS
VAFLSMQRMMSHTVEVYVAKVRQQHPQLPEDAVRDKAGTWKMLDEKEQERKRAFYRDILA
QQQALTLGIQAILNSRRNSSLQPGQT
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcgacgctgagcacaagcaagctgaatgtattggtcaataagctgcacgag
tacttggctcattctactgttgaggacagcaatggaacaccaacctcagaggatgcagat
ggtctgacaaacaggagctgttctgtggggaacttgacaggtcatgctgcgacagtggca
ggagttgataccaaatactcaaggagaaaaccatctgttgtcataaaacactctggactg
gatgaatctggggactcaaatgcaagtgaggatgtggatttaccagttaatacaaatggt
cgccttgacatcactagattaccaaaaggcactgtactggtgaggcctgaacctgttgac
aatggaagagatgacttcaggggtcctgagtttcgtagccgcaaatcaggcgtactgcgg
aaagatttctccagaagacgtggaggagtggaacacatgggaattgtcagttgcactgca
tgtggccgacaagtcaaccatttccagaaagattccttctttcggcatccagttctgaaa
gtacttatttgcaagtcttgctacaagtattattcaagtgatgacatcagtaaggatgga
gatggaatggacgagcaatgccgatggtgtgctgaaggaggcaacttgatctgttgtgac
ttctgtagtaatgccttctgcaagaagtgtattctcagaaatctgggaaggaaggagctg
tctggcatcttggaaagcaaatggtactgctatgtgtgcagcccagagaccctttttgac
ctggtgatggcctgtgacaatgtgcttgagaacatggagcatctgtggtatcagcagcgc
aggaagaaccgagtagagccggagaaatctgacctttacgccatgttgccacacctgcca
caaaacattcccttggataaatgggatcacactggaatggatggtagtgtggtgttcaac
tataacacactgcagatttcaaaggatgttaccaaaaaggccaaacatttagtggactcg
acaaacatcttaaaccggacatttgtcaacttcattcattctgtgacggcaaaccaacaa
gcacctcctgttcgcactctgtaccttaactcttttctgtcagtagttaaaggcttgcga
aaatcccttgcagcactggaggatagcttgaaggaagaattcagtgacttggatgtaatg
agctgttgggaaaagttctttagtgaggactttaatgcacaacctggagcagatgcagag
acagataacccagataaaaggtgcttgagtgacttgcagaaattggcagctgaacatttg
gaagattatgattcggactctaaaggcttcattgctgggagaaccgcacatgcctgccct
gggacaaacttggattcagattcacacggagtgagaccgagggcacaaaagattgtcctg
aagccttcaacaagtggggtcaacatgactaaaaaactagtagtaaaacttacacctgta
ccaatggagcaggggccatcctctgatgccccagagaaggacatccacatgagcgataag
tcagagggaaaggatgtgtcggactctgaagagacgggtgttgtcggcgctaaagctgac
agcaagatgagtaatgacagctctattgcatctctacacacagaagaggaacaaggcaat
agacgctctcctcgcgtgaagacgacgcctttgcgtcgaccgagtgacgtcaaggccaaa
acgtcttcagcagcagacagtgacagtgactctgacccggaggaaacctgcagctcagca
ccagccaaaaacactgaagaacaaagtgagaacagagcaagagacgactctgactcagat
gaagtccctgcagctctgcttgagcgagcagctataacgcaaagctctgatgaacctcag
agtgatgagaacggtggaaaagcctcaactaaggtggccaagaaatgtctcttttggctc
actaagaacagcccaatctcaccggagaagatgcgccgcaaacgcaaaatgttggaccgc
tcccccgagtctgactcgagtaacagaagcgtaaaatcacgaaggggcagtgggacagat
tcctctcgtgatcaaaattcacagaaaatacaacacttgaatacgctgaggccaataggg
aagtctcacctcgtcaaacgagaggatgaagacgtggctagaaaccagggtaggatacag
cctggaaagtctaaggctaaatctcatcagaaggcaatggagtcgtcatcctcgtcaaac
gatgatgatgacgatgatgatgatgacgacgatgacgacggcgacgacgactctgggagc
gaaggaagtgatcagaagatgaagccaatcactgaagatgtggccttactgggagcagca
gctttccaccaatcatcgggagacgaggagcactctgggccctcgtgggcagcagaagat
gatgatgatgatgatgatgatccagaaaatagaatcgctaagaaaatgctattggcccaa
atcaaagccaactactcctcgggcgatgatatctcttcggatgaggagacgccggaggag
gagaaggtcaaacaaggaaatgaaacggatgaaaatggggaagaattaacttcagactcc
tctgacaccacgtctaatgggcccaactccaggcaccatcttctccgcctcaaactaacc
ttagacgagggaacgccaagcgacgagccagagagcgttgtggcgaaaccggcgagcaag
aaaagagccagcagcaaacacctgagctctgatagtgaaagtgaggaggacacaaacgag
tcggattcgcaggatattgggatgagcgaggaattgagtcagtcagaggatgaggccggt
ggaaacggactcaaaagctccagattatccagtaaggggaaggaggccccccctagttac
gagcagaagaaaccagtgccctgcatttggttgtctgactccaacagtgaaaagagtgat
aaagaggatgacgatgaggagaacagcgacagtaaaggcactcctaaaggacgcaagaag
atccgcaaaatcattgacgacgagaatctccgtgctgagacccaggaagccgtccgagag
gagcaggagagatgcaagcgtctggcaagcagggagcaacagatggaggacaggagagag
agtattgttatcgaggatgagctgactcaagtggtgtgccccatcaccaccaagctgatc
ctggatcaggatgagacgaccaaaaagcctcttgttcaggtgcacaggaacctggtgacg
aggctgaagcctcaccaggtggacggtgtccagtttatttgggacagttgctgtgagtct
gtgaagaaggccaactcttctcctggaacaggctgcatattggctcactgcatgggcctg
ggaaagactctgcaggtggtaactttcctccacacggtgctgctgtcagagaacctgaaa
ttccgaacggccctggtcgtgtgtccgcttaacaccatcctcaactgggacagcgagttc
aagaaatggcaaagcaacatgcaacaggatcaagtaaaagtcacagaactggcctcagtg
aagaatgttagagaacgaatcagggctctgcagaggtggcggagagacggaggtgttatg
attatgggatacgagatgtaccgcaacatgtcgctagcccagatggtcaaggatcaggag
tgcaagaaagatttaaagagcctactggtgaatccaggtccagactttgtggtgtgtgac
gagggacacatcctgcgcaatgaaagatccaacatctccaaatctatgaacgccatcagg
acccagcggagagtggtgctgactggcacaccactccaaaacaacctgaatgagtaccac
tgcatggtcaatttcatcaagaggaatctactgggctcgctgggcgagttcaggaaccgc
ttcatcaaccccatacagaacggccagtgtgccgactccacatcgagagacgtccggatc
atgaagaaacgagcacatgtgcttcatgcaatgttggttggatgtgtgcagagaagagat
tactccgagttgactcagtttctgcctcccaaacacgagtatgtgctggaggtgagggtc
accccacatcagtacaggttgtaccgctactaccttgaccacgtcaccggtgtgagctcc
ctgacgaacacagctaaggggaagattggagcaaacctgttcaaggactttcaggcgctc
agccgcatctggactcatccgtggtgccttcagctcaactacatcagcaaagagaacaag
agctattttaaaaagaacaaaacgaaagcggcagctgtgcagaggaacgaagctgagaga
gcactgagagagaacgcaggaaaagaggggaacaacaatgacggcagtgcagccgtgact
gtcggggtgtccacaggcgctgcagctgtggatgagtgctggttcaagaatctgctttct
gaggaggacgccaacatcatggagcactcggggaagatggtgctcctgtttaagatcctc
agaatggctgaagacttggacgataaagtgcttgtgtttagtcagtctttgatctcgttg
gacctgattgaggatttcctcaaggcttctcaccatgccagagacccatcgttattaaaa
gagggcagctggattaaaaacgtggattactatcgtctggatggctccaccaatgctatg
ttaaggaagaaatgggcagatcagttcaataatgtctccaatgttcgcggccggttattt
ctcatctcaacgagagctggctcactcggcatcaacctcgttgcagccaaccgggtcatc
atctttgatgcctcgtggaatccctcaaatgacatccagagcatttacagagtgtaccgc
ttcggtcaactgaaacacgtgtttgtttaccgcttcttggcgcagggcaccatggaggag
aagatctatgatcgtcaggtgaccaagcagtctttggccaatcgagtggtggatcagcag
cagatcgagaggcactacaccctttttgaactgactgaactttacacatttgagccagac
atgctggacgacccaaactccaagaaaagcaaaagatccacctctgttctgccaaaggat
aatatcttggcacgactattacaaacatctaaagaccagatagtggctttccatgagcac
gagtctctgttggaccataaacaagaggaggagctcagtgaggcggagcggaaagatgcc
tgggccgagtacgaggccgagtcttcaaaccttccaaccagcttgaaccagaaaaccttg
gatacaaagaccaatgaagagctagtggaattgctgaacaagagcagagcagatgtatcg
gtggccttcctgtcaatgcagaggatgatgtctcacaccgttgaggtctacgtcgccaaa
gtgcggcaacagcatcctcagctgcccgaggacgcggttagagacaaagctgggacttgg
aaaatgttggatgagaaggagcaggaacgtaaacgggccttctatcgcgacatccttgca
cagcaacaagcactcacgctcggcatccaggccatactgaacagtcggaggaacagtagt
ctgcagcctggacagacgtga
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